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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TTVPGSLVWELVKKNNCFLIKQFGNSNAKVQFSKEPNNLYNVHSYKFSGLANSKTVAVQPSAGEDKAVVLSTTKTKKQNT
PAKLQHKTLMRKEFRKMAKSVKNQVCDNYYRPDLTKPALARLSAVYRSLQVSKSGIKKKNRQ

The query sequence (length=142) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ip8:QA 142 142 1.0000 1.0000 1.0000 3.65e-103 8ipa:QA, 8ipb:QA, 8jiv:Cr
2 8azw:N 142 142 0.7113 0.7113 0.7113 1.72e-71 8b2l:N3, 7qiw:r, 7qiz:r
3 4v3p:Lb 73 73 0.4225 0.8219 0.8219 9.01e-39 4v7e:Cr
4 7r81:s1 149 134 0.3803 0.3624 0.4030 1.26e-22
5 4v6w:Cr 134 122 0.3380 0.3582 0.3934 7.18e-19 6xu6:Cr, 6xu7:Cr, 6xu8:Cr
6 4v6x:Cr 137 122 0.3169 0.3285 0.3689 3.19e-18 7a01:J2, 8a3d:k, 5aj0:At, 8b5l:r, 8b6c:r, 9bdl:ALNW, 9bdn:ALNW, 9bdp:ALNW, 7bhp:Lr, 8bhf:d1, 8bpo:p2, 8btk:Br, 7cpu:Lr, 7cpv:Lr, 4d5y:t, 4d67:t, 6d90:r, 6d9j:r, 9f1b:Br, 9f1c:Br, 9f1d:Br, 7f5s:Lr, 8fkq:LL, 8fks:LL, 8fku:LL, 8fkw:LL, 8fkx:LL, 8fky:LL, 8fkz:LL, 8fl0:LL, 8fl2:LL, 8fl3:LL, 8fl4:LL, 8fl6:LL, 8fl7:LL, 8fl9:LL, 8fla:LL, 8flb:LL, 8flc:LL, 8fld:LL, 8fle:LL, 8flf:LL, 9fpz:Lr, 9fq0:Lr, 6frk:3, 6ftg:r, 6fti:r, 6ftj:r, 8g5y:Lr, 8g5z:Lr, 8g60:Lr, 8g61:Lr, 8g6j:Lr, 8glp:Lr, 6gz3:At, 6gz4:At, 6gz5:At, 6hcf:r3, 6hcj:r3, 6hcm:r3, 6hcq:r3, 8idt:l, 8idy:l, 8ie3:l, 8ifd:2k, 8ife:2k, 8ine:l, 8inf:l, 8ink:l, 6ip5:2k, 6ip6:2k, 6ip8:2k, 8ipd:l, 8ipx:l, 8ipy:l, 8ir1:l, 8ir3:l, 3j7o:r, 3j7p:r, 3j7q:r, 3j7r:r, 3j92:r, 3jag:r, 3jah:r, 3jai:r, 3jaj:r, 3jan:r, 8jdj:v, 8jdk:v, 8jdl:v, 8jdm:v, 8k2c:Lr, 5lks:Lr, 6lqm:l, 6lsr:l, 6lss:l, 7ls1:k2, 7ls2:k2, 6lu8:l, 5lzs:r, 5lzt:r, 5lzu:r, 5lzv:r, 5lzw:r, 5lzx:r, 5lzy:r, 5lzz:r, 7mdz:r, 6mtb:r, 6mtc:r, 6mtd:r, 6mte:r, 7nfx:r, 7nwg:r3, 7nwh:r, 7nwi:r, 7o7y:Br, 7o7z:Br, 7o80:Br, 7o81:Br, 7obr:r, 8ohd:Lr, 8oj0:Lr, 8oj5:Lr, 8oj8:Lr, 6ole:r, 6olf:r, 6olg:At, 6oli:r, 6olz:At, 6om0:r, 6om7:r, 7ow7:k, 7oyd:r, 8p2k:Br, 6p5i:Ar, 6p5j:Ar, 6p5k:Ar, 6p5n:Ar, 8qfd:r, 7qgg:r, 8qoi:Lr, 7qvp:Lr, 7qvp:Mr, 7qwq:r, 7qwr:r, 7qws:r, 6qzp:Lr, 6r5q:r, 6r6g:r, 6r6p:r, 6r7q:r, 8rjb:r, 8rjc:r, 8rjd:r, 8scb:r, 6sgc:r2, 6swa:p, 5t2c:k, 6t59:r3, 7tm3:r, 7toq:EL28, 7tor:ALNW, 7tut:r, 7ucj:r, 7uck:r, 4ug0:Lr, 4ujc:Bt, 4ujd:At, 4uje:Ct, 6w6l:r, 6xa1:Lr, 7xnx:Lr, 7xny:Lr, 8xsx:Lr, 8xsy:Lr, 8xsz:Lr, 6y0g:Lr, 8y0w:Lr, 8y0x:Lr, 6y2l:Lr, 6y57:Lr, 6y6x:Lr, 8yoo:Lr, 8yop:Lr, 6z6l:Lr, 6z6m:Lr, 6z6n:Lr, 7zjw:Ls, 7zjx:Ls, 6zm7:Lr, 6zme:Lr, 6zmi:Lr, 6zmo:Lr, 6zvk:J2
7 7oya:r1 118 119 0.3028 0.3644 0.3613 2.60e-17 7oyb:r1
8 8q7z:Br 126 122 0.3099 0.3492 0.3607 3.79e-17 8q87:Br
9 7olc:Lq 141 128 0.3028 0.3050 0.3359 4.66e-17 8i9w:CV, 8i9x:CV, 8i9y:CV, 8i9z:CV, 8ia0:CV, 7old:Lq, 8oo0:Lq, 8pv1:Lq, 8pv2:Lq, 8pv3:Lq, 8pv4:Lq, 8pv5:Lq, 8pv6:Lq, 8pv7:Lq, 8pv8:Lq, 8pvk:Lq, 8pvl:Lq, 7z3n:Lq, 7z3o:Lq
10 7oyc:r1 118 119 0.3099 0.3729 0.3697 5.50e-16
11 5xxb:p 122 131 0.2324 0.2705 0.2519 7.19e-07
12 4v8p:AO 134 123 0.2183 0.2313 0.2520 1.73e-04 4v8p:DO, 4v8p:FO, 4v8p:HO
13 5t2a:a 146 115 0.2254 0.2192 0.2783 0.002 8a3w:Z, 8a98:Z, 6az3:Z, 8ovj:Z, 8rxh:LZ, 8rxx:LZ
14 3j79:2 104 64 0.1479 0.2019 0.3281 0.14 3jbn:A2, 3jbo:A2, 3jbp:A2, 8tpu:A2, 5umd:2
15 3jcs:Z 79 58 0.1268 0.2278 0.3103 0.15
16 4v8m:BX 121 47 0.1268 0.1488 0.3830 3.4 8ova:BX, 8ove:BX, 5t5h:X
17 8t5s:A 693 67 0.1408 0.0289 0.2985 4.9
18 4zg8:A 426 31 0.0704 0.0235 0.3226 5.3 4zg8:B, 4zh5:A, 4zh5:B
19 3nvj:A 351 27 0.0704 0.0285 0.3704 6.9
20 1rp4:A 374 27 0.0704 0.0267 0.3704 7.4 3m31:A, 1rq1:A
21 7vu2:A 435 53 0.1197 0.0391 0.3208 9.9 7vu3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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