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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVA
ERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARA
IVERNREQPMTRTKELAEVVAAATPVKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLEDRIVKR
FMRENSRGRQLRALGKLMPGEEEVAENPRARSSVLRIAERTNA

The query sequence (length=283) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3tka:A 283 283 1.0000 1.0000 1.0000 0.0
2 1wg8:A 281 283 0.4664 0.4698 0.4664 2.56e-76 1wg8:B
3 7pnx:b 326 323 0.4629 0.4018 0.4056 5.25e-66 8ipk:A, 8ipl:A, 8ipm:D, 7pny:b, 7pnz:b, 8qrl:8
4 7pnv:b 323 320 0.4452 0.3901 0.3937 2.97e-63
5 1m6y:A 293 290 0.4452 0.4300 0.4345 1.11e-61 1m6y:B, 1n2x:A, 1n2x:B
6 6sg9:FF 408 241 0.2509 0.1740 0.2946 5.72e-19 6sgb:FF
7 8h0s:B 171 100 0.0883 0.1462 0.2500 0.015 8h0s:D, 4poo:B
8 6nsd:A 503 153 0.1449 0.0815 0.2680 0.065 6nsd:B
9 4nqr:A 364 58 0.0636 0.0495 0.3103 0.41 4nqr:B, 4nv3:A, 4nv3:B, 4oat:A, 4oat:B, 4obb:A, 4obb:B, 4og2:A, 4og2:B, 4otz:A, 4otz:B, 4qym:A, 4qym:B, 4rdc:A, 4rv5:A, 4rv5:B
10 6uo8:A 689 72 0.0777 0.0319 0.3056 0.52 7c7q:A, 7c7s:A, 7ca3:A, 7cum:A, 7eb2:C, 4mqf:A, 4mr7:A, 4mr8:A, 4mr9:A, 4mrm:A, 4ms1:A, 4ms3:A, 4ms4:A, 6uo9:A, 6w2x:A, 6w2y:A, 6w2y:B, 6wiv:A
11 3eey:A 195 35 0.0459 0.0667 0.3714 1.1 3eey:B, 3eey:C, 3eey:D, 3eey:E, 3eey:F, 3eey:H, 3eey:I, 3eey:J
12 3cbg:A 218 31 0.0495 0.0642 0.4516 1.3
13 8h0s:C 190 40 0.0459 0.0684 0.3250 3.2 8h0s:A, 8h0t:A, 4poo:A
14 5w7k:A 274 85 0.0919 0.0949 0.3059 4.5 5w7k:B
15 1eiz:A 180 38 0.0424 0.0667 0.3158 5.9 1ej0:A
16 5f7v:A 388 79 0.0742 0.0541 0.2658 7.2
17 7kc1:H 125 62 0.0424 0.0960 0.1935 7.9 7kc1:E, 7kc1:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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