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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TTTIAAGPYRRVGNVFIVTCIDHPFKFSWEVNRMLRELRLEFMGQTTVVPDIPPVRKRIWRVRHVVRVDQLDLDEAKALI
GIPEHISFRDLAGQIPPTFGRGGSVANPHMRSKMNFMRLRRMRLRDVMHRDQLEKRLLEERHHALQQQQQ

The query sequence (length=150) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7aih:S 150 150 1.0000 1.0000 1.0000 9.02e-110 7am2:S, 7ane:S
2 7aoi:A3 150 150 0.7400 0.7400 0.7400 1.69e-75 6hiv:A3, 6hix:A3, 6yxx:A3, 6yxy:A3
3 4hec:B 163 68 0.1400 0.1288 0.3088 0.021 4hec:A, 4hvj:A, 4hvj:B, 4oke:A, 4oke:B, 4okj:A, 4okj:B, 4okk:A, 4okk:B, 6s0m:B
4 6b4v:AA 60 55 0.1000 0.2500 0.2727 0.080 5a9z:AZ, 5aa0:AZ, 7azo:L30A, 7azo:L30B, 7azs:L30A, 7azs:L30B, 9b00:13, 9b00:23, 6b4v:EC, 6boh:AA, 6boh:FC, 6bok:AA, 6bok:DC, 6buw:R3, 6buw:Y3, 6bz6:R3, 6bz6:Y3, 6bz7:R3, 6bz7:Y3, 6bz8:R3, 6bz8:Y3, 6c5l:B3, 6c5l:D3, 6cae:13, 6cae:23, 6cfj:13, 6cfj:23, 6cfk:13, 6cfk:23, 6cfl:13, 6cfl:23, 8cvj:13, 8cvj:23, 8cvk:13, 8cvk:23, 8cvl:13, 8cvl:23, 5czp:Y3, 5czp:R3, 6czr:13, 6czr:23, 5d8b:X, 5d8b:TB, 5dfe:Y3, 5dfe:R3, 5dox:13, 5dox:23, 5doy:13, 5doy:23, 5e7k:L8, 5e7k:H5, 5e81:L8, 5e81:H5, 8ekb:13, 8ekb:23, 5el4:L8, 5el4:H5, 5el5:L8, 5el5:H5, 5el6:L8, 5el6:H5, 5el7:L8, 5el7:H5, 8ev6:13, 8ev6:23, 8ev7:13, 8ev7:23, 5f8k:13, 5f8k:23, 8fc1:13, 8fc1:23, 8fc2:13, 8fc2:23, 8fc3:13, 8fc3:23, 8fc4:13, 8fc4:23, 8fc5:13, 8fc5:23, 8fc6:13, 8fc6:23, 5fdu:13, 5fdu:23, 5fdv:13, 5fdv:23, 6fkr:13, 6fkr:23, 8fom:R3, 8fom:Y3, 8fon:R3, 8fon:Y3, 8g29:13, 8g29:23, 8g2a:13, 8g2a:23, 8g2b:13, 8g2b:23, 8g2c:13, 8g2c:23, 8g2d:13, 8g2d:23, 6gsj:L8, 6gsj:H5, 6gsk:L8, 6gsk:H5, 6gsl:L8, 6gsl:H5, 6gzq:Y1, 6gzx:Y1, 6gzx:Y2, 6gzz:Y1, 6gzz:Y2, 5hau:11, 5hau:21, 5hcp:13, 5hcp:23, 5hcq:13, 5hcq:23, 5hcr:13, 5hcr:23, 5hd1:13, 5hd1:23, 5ib7:L8, 5ib7:H5, 5ib8:L8, 5ib8:H5, 5ibb:L8, 5ibb:H5, 5imq:u, 5imr:u, 5j30:R3, 5j30:Y3, 5j3c:R3, 5j3c:Y3, 5j4b:13, 5j4b:23, 5j4c:13, 5j4c:23, 5j4d:AA, 5j4d:FC, 5j8b:3, 7jql:13, 7jql:23, 7jqm:13, 7jqm:23, 4l47:R3, 4l47:Y3, 4l71:R3, 4l71:Y3, 4lel:R3, 4lel:Y3, 4lfz:R3, 4lfz:Y3, 7lh5:B3, 7lh5:D3, 4lnt:R3, 4lnt:Y3, 4lsk:R3, 4lsk:Y3, 4lt8:R3, 4lt8:Y3, 7md7:13, 7md7:23, 1ml5:x, 6n1d:AL30, 6n1d:BL30, 6n9e:13, 6n9e:23, 6n9f:13, 6n9f:23, 5ndj:L8, 5ndj:H5, 5ndk:L8, 5ndk:H5, 6nd5:13, 6nd5:23, 6nd6:13, 6nd6:23, 6ndk:R3, 6ndk:Y3, 6nsh:R3, 6nsh:Y3, 6nta:R3, 6nta:Y3, 6nuo:R3, 6nuo:Y3, 6nwy:R3, 6nwy:Y3, 6o3m:R3, 6o3m:Y3, 6o97:13, 6o97:23, 6of1:13, 6of1:23, 6of6:R3, 6of6:Y3, 6oj2:R3, 6oj2:Y3, 6ope:R3, 6ope:Y3, 6ord:R3, 6ord:Y3, 6osi:R3, 6osi:Y3, 5ot7:Y, 6otr:R3, 6otr:Y3, 6oxa:R3, 6oxa:Y3, 6oxi:R3, 6oxi:Y3, 4p6f:R3, 4p6f:Y3, 4p70:R3, 4p70:Y3, 6q95:Z, 6qnq:L8, 6qnq:H5, 6qnr:L8, 6qnr:H5, 7rq8:13, 7rq8:23, 7rq9:13, 7rq9:23, 7rqa:13, 7rqa:23, 7rqb:13, 7rqb:23, 7rqc:13, 7rqc:23, 7rqd:13, 7rqd:23, 7rqe:13, 7rqe:23, 8t8b:13, 8t8b:23, 8t8c:13, 8t8c:23, 4tua:R3, 4tua:Y3, 4tub:R3, 4tub:Y3, 4tuc:R3, 4tuc:Y3, 4tud:R3, 4tud:Y3, 4tue:R3, 4tue:Y3, 7u2h:13, 7u2h:23, 7u2i:13, 7u2i:23, 7u2j:13, 7u2j:23, 6ucq:13, 6ucq:23, 8ud6:13, 8ud6:23, 8ud7:13, 8ud7:23, 8ud8:13, 8ud8:23, 6uo1:13, 6uo1:23, 5uq7:3, 5uq8:3, 8uvr:13, 8uvr:23, 8uvs:13, 8uvs:23, 4v42:BX, 4v4i:X, 4v4j:X, 4v4p:AX, 4v4r:B3, 4v4s:B3, 4v4t:B3, 4v4x:B2, 4v4y:B2, 4v4z:B2, 4v51:B3, 4v51:D3, 4v5a:B3, 4v5a:D3, 4v5c:B3, 4v5c:D3, 4v5d:B3, 4v5d:D3, 4v5e:B3, 4v5e:D3, 4v5f:B3, 4v5f:D3, 4v5g:B3, 4v5g:D3, 4v5j:B3, 4v5j:D3, 4v5k:B3, 4v5k:D3, 4v5l:B3, 4v5m:B3, 4v5n:B3, 4v5p:B3, 4v5p:D3, 4v5q:B3, 4v5q:D3, 4v5r:B3, 4v5r:D3, 4v5s:B3, 4v5s:D3, 4v63:B3, 4v63:D3, 4v67:B3, 4v67:D3, 4v68:B3, 4v6a:B3, 4v6a:D3, 4v6f:AX, 4v6f:DX, 4v6g:BX, 4v6g:DX, 4v7j:A3, 4v7j:B3, 4v7k:A3, 4v7k:B3, 4v7l:B3, 4v7l:D3, 4v7m:B3, 4v7m:D3, 4v7p:BZ, 4v7p:CZ, 4v7w:B3, 4v7w:D3, 4v7x:B3, 4v7x:D3, 4v7y:B3, 4v7y:D3, 4v7z:B3, 4v7z:D3, 4v83:BZ, 4v83:DZ, 4v84:BZ, 4v84:DZ, 4v87:AX, 4v87:DX, 4v8a:A3, 4v8a:B3, 4v8b:BX, 4v8b:DX, 4v8c:AX, 4v8c:BX, 4v8d:BX, 4v8d:DX, 4v8e:AX, 4v8e:CX, 4v8f:AX, 4v8f:DX, 4v8g:B3, 4v8g:D3, 4v8h:B3, 4v8h:D3, 4v8i:B3, 4v8i:D3, 4v8j:B3, 4v8j:D3, 4v8n:B3, 4v8n:D3, 4v8o:B3, 4v8q:A3, 4v8u:B3, 4v8u:D3, 4v8x:B3, 4v8x:D3, 5v8i:13, 5v8i:23, 4v90:B3, 4v95:B3, 4v95:D3, 4v97:B3, 4v97:D3, 4v9a:BX, 4v9a:DX, 4v9b:BX, 4v9b:DX, 4v9h:B3, 4v9i:B3, 4v9i:D3, 4v9j:B3, 4v9j:D3, 4v9k:B3, 4v9k:D3, 4v9l:B3, 4v9l:D3, 4v9m:B3, 4v9m:D3, 4v9n:B3, 4v9n:D3, 4v9q:AZ, 4v9q:CZ, 4v9r:B3, 4v9r:D3, 4v9s:B3, 4v9s:D3, 5vp2:13, 5vp2:23, 5vpo:R3, 5vpo:Y3, 5vpp:R3, 5vpp:Y3, 8vtu:13, 8vtu:23, 8vtv:13, 8vtv:23, 8vtw:13, 8vtw:23, 8vtx:13, 8vtx:23, 8vty:13, 8vty:23, 1vvj:R3, 1vvj:Y3, 1vy4:B3, 1vy4:D3, 1vy5:B3, 1vy5:D3, 1vy6:B3, 1vy6:D3, 1vy7:B3, 1vy7:D3, 4w29:B3, 4w29:D3, 4w2e:3, 4w2f:B3, 4w2f:D3, 4w2g:B3, 4w2g:D3, 4w2h:B3, 4w2h:D3, 4w2i:B3, 4w2i:D3, 4w4g:R3, 4w4g:Y3, 5w4k:13, 5w4k:23, 5wis:13, 5wis:23, 5wit:13, 5wit:23, 4wpo:A3, 4wpo:C3, 4wq1:L8, 4wq1:H5, 4wqf:A3, 4wqf:C3, 4wqr:L8, 4wqr:H5, 4wqu:A3, 4wqu:C3, 4wqy:A3, 4wqy:C3, 4wr6:L8, 4wr6:H5, 4wra:L8, 4wra:H5, 4wro:L8, 4wsd:L8, 4wsd:H5, 4wsm:L8, 4wsm:H5, 4wt1:L8, 4wt1:H5, 4wt8:CL, 4wt8:DL, 4wu1:L8, 4wu1:H5, 4wzd:L8, 4wzd:H5, 4wzo:L8, 4wzo:H5, 4xej:AL30, 4xej:BL30, 6xhv:13, 6xhv:23, 6xhw:13, 6xhw:23, 6xhx:13, 6xhx:23, 6xhy:13, 6xhy:23, 6xqd:13, 6xqd:23, 6xqe:13, 6xqe:23, 4y4o:13, 4y4o:23, 4y4p:13, 4y4p:23, 4ypb:R3, 4ypb:Y3, 4yzv:R3, 4yzv:Y3, 4z3s:13, 4z3s:23, 4z8c:13, 4z8c:23, 4zer:13, 4zer:23, 5zlu:v, 4zsn:R3, 4zsn:Y3
5 3t7k:B 234 49 0.0933 0.0598 0.2857 0.77 3t7k:A
6 4ac9:C 471 51 0.1267 0.0403 0.3725 2.2 4ac9:A, 4ac9:B, 4aca:B, 4aca:C, 4acb:A, 4acb:B, 4acb:C
7 7eo3:A 282 59 0.1067 0.0567 0.2712 3.5
8 9c4g:y 58 36 0.0867 0.2241 0.3611 4.3 8crx:y, 8cvm:y
9 8iqi:C 916 89 0.1667 0.0273 0.2809 6.1 8iqc:A, 8iqc:B, 8iqd:A, 8iqd:B, 8iqd:C, 8iqd:D, 8iqi:A, 8iqi:B, 8iqi:D, 8iqi:E, 8iqi:F
10 4ck8:B 450 36 0.0867 0.0289 0.3611 7.3 5ajr:A, 4bmm:A, 4bmm:B, 4bmm:C, 4bmm:D, 4by0:A, 4by0:B, 4c0c:A, 4c27:A, 4c27:B, 4c28:A, 4c28:B, 4ck8:A, 4ck9:A, 4cka:A, 4coh:A, 4coh:B, 6fmo:A, 6fmo:B, 6fmo:C, 6fmo:D, 4h6o:A, 3k1o:A, 3khm:A, 3ksw:A, 4uqh:A, 4uvr:A, 2wuz:A, 2wuz:B, 2wx2:A, 2wx2:B, 3zg2:A, 3zg3:A
11 4dur:A 756 44 0.0933 0.0185 0.3182 8.0 1b2i:A, 1bui:A, 1cea:A, 1cea:B, 1ceb:A, 1ceb:B, 4cik:A, 6d3x:A, 6d3x:B, 6d3y:A, 6d3z:A, 6d40:A, 2doh:X, 2doi:X, 2doi:A, 4dur:B, 8f7u:A, 8f7u:B, 8f7v:A, 8f7v:B, 1hpk:A, 1i5k:A, 1i5k:B, 1ki0:A, 1pk4:A, 1pkr:A, 2pk4:A, 6q1u:A, 6q1u:B, 7ths:A, 7ths:B, 7uah:A, 7uah:B, 5ugd:A, 5ugg:A
12 4bjk:A 450 36 0.0867 0.0289 0.3611 8.1 4bjk:B, 4bjk:C, 4bjk:D, 3g1q:A, 3g1q:B, 3g1q:C, 3g1q:D, 4g3j:A, 4g3j:B, 4g3j:C, 4g3j:D, 4g7g:A, 4g7g:B, 4g7g:C, 4g7g:D, 3gw9:A, 3gw9:B, 3gw9:C, 3gw9:D, 3p99:A, 3p99:B, 3p99:C, 3p99:D, 3tik:A, 3tik:B, 3tik:C, 3tik:D, 2wv2:A, 2x2n:A, 2x2n:B, 2x2n:C, 2x2n:D
13 3l4d:B 449 36 0.0867 0.0290 0.3611 8.9 3l4d:A, 3l4d:C, 3l4d:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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