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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TTTAHSDYEIILEGGSSSWGQVKGRAKVNVPAAIPLLPTDCNIRIDAKPLDAQKGVVRFTTKIESVVDSVKNTLNVEVDI
ANETKDRRIAVGEGSLSVGDFSHSFSFEGSVVNMYYYRSDAVRRNIPNPIYMQGRQFHDILMKVPLDNNDLVDTWEGFQQ
SISGGGANFGDWIREFWFIGPAFAAINEGGQRISPIVVNSSNVEGGKGPVGVTRWKFSHAGSGVVDSISRWTELFPVEQL
NKPASIEGGFRSDSQGIEVKVDGNLPGVSRDAGGGLRRILNHPLIPLVHHGMVGKFNDFTVDTQLKIVLPKGYKIRYAAP
QFRSQNLEEYRWSGGAYARWVEHVCKGGTGQFEVLYAQ

The query sequence (length=358) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6mez:B 359 359 1.0000 0.9972 0.9972 0.0 4bcl:A, 3eoj:A, 6mez:A, 3vdi:A
2 7uea:U 364 359 0.7849 0.7720 0.7827 0.0 3bsd:A, 3eni:A, 3eni:C, 8gwa:1, 8gwa:2, 8gwa:3, 8gwa:4, 8gwa:5, 8gwa:6, 5h8z:A, 5h8z:C, 6m32:E, 6m32:F, 6m32:G, 7uea:V, 7uea:W, 7ueb:U, 7ueb:V, 7ueb:W, 7ueb:X, 7ueb:Y, 7ueb:Z, 7z6q:E, 7z6q:F, 7z6q:G, 7z6q:H, 7z6q:I, 7z6q:J
3 7yop:B 304 63 0.0475 0.0559 0.2698 0.068 8grw:A, 8grw:B, 7yop:A, 7ysz:A, 7ysz:B
4 6o6v:A 433 68 0.0503 0.0416 0.2647 1.7 6o6v:B, 6o6x:A, 6o6x:B, 6o6y:A, 6o6y:B, 6o6z:A, 6o6z:B, 6o70:A, 6o70:B, 6o71:A, 6o71:B, 6ov0:A, 6ov0:B, 6ov0:C, 6ov0:D
5 1bib:A 294 55 0.0475 0.0578 0.3091 1.7
6 4e1b:A 330 149 0.0810 0.0879 0.1946 2.3 3aje:A, 2eqa:A
7 1w4x:A 533 74 0.0475 0.0319 0.2297 3.9 4c74:A, 4c77:A, 4d03:A, 4d04:A, 4ovi:A, 2ylr:A, 2yls:A, 2ylt:A, 2ylw:A, 2ylx:A, 2ylz:A, 2ym1:A, 2ym2:A
8 6eo0:B 275 30 0.0307 0.0400 0.3667 7.6 6enx:A, 6eo0:A, 6eo0:C, 6eo0:D, 6fky:A, 6fky:B, 6fkz:A, 6fkz:B, 6flg:A, 6flg:B, 5ojo:A, 5ojo:B, 4utn:A, 4utn:B, 4utr:A, 4utr:B, 4utv:A, 4utv:B, 4utx:A, 4utx:B, 4utz:A, 4utz:B, 4uu7:A, 4uu7:B, 4uu8:A, 4uu8:B, 4uua:A, 4uua:B, 4uub:A, 4uub:B
9 3l87:A 200 47 0.0391 0.0700 0.2979 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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