Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TTSITDLYNEVAKSDLGLANPLVSIIMTSHNTAQFIEASINSLLLQTYKNIEIIIVDDDSSDNTFEIASRIANTTSKVRV
FRLNSNLGTYFAKNTGILKSKGDIIFFQDSDDVCHHERIERCVNILLANKETIAVRCAYSRLAPETQHIIKVNNMDYRLG
FITLGMHRKVFQEIGFFNCTTKGSDDEFFHRIAKYYGKEKIKNLLLPLYYNTMRENSLFTDMVEWIDNHNIIQKMSDTRQ
HYATLFQAMHNETASHDFKNLFQFPRIYDALPVPQEMSKLSNPKIPVYINICSIPSRIAQLRRIIGILKNQCDHFHIYLD
GYVEIPDFIKNLGNKATVVHCKDKDNSIRDNGKFILLEELIEKNQDGYYITCDDDIIYPSDYINTMIKKLNEYDDKAVIG
LHGILFPSRMTKYFSADRLVYSFYKPLEKDKAVNVLGTGTVSFRVSLFNQFSLSDFTHSGMADIYFSLLCKKNNILQICI
SRPANWLTEDNRDSETLYHQYRDNDEQQTQLIMENGPWGYSSIYPLVKNHPKFTDLIPCLPFYFL

The query sequence (length=545) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8viw:B 545 545 1.0000 1.0000 1.0000 0.0 8vh7:A, 8vh7:B, 8vh8:A, 8vh8:B, 8vh8:C, 8vh8:D, 8viw:A, 8viw:D, 8viw:C
2 6h4f:B 318 105 0.0734 0.1258 0.3810 7.53e-10 6h1j:B, 6h21:A, 6h21:B, 6h21:C, 6h2n:A, 6h2n:B, 6h2n:C, 6h4f:C, 6h4f:F, 6h4f:O, 6h4f:P, 6h4f:E, 6h4f:G, 6h4f:Q, 6h4f:A, 6h4f:D, 6h4f:H, 6h4f:I, 6h4m:B, 6h4m:C, 6h4m:F, 6h4m:O, 6h4m:P, 6h4m:E, 6h4m:G, 6h4m:Q, 6h4m:A, 6h4m:D, 6h4m:H, 6h4m:I, 6hnq:B, 6hnq:C, 6hnq:F, 6hnq:O, 6hnq:P, 6hnq:E, 6hnq:G, 6hnq:Q, 6hnq:A, 6hnq:D, 6hnq:H, 6hnq:I
3 2z86:C 603 120 0.0679 0.0614 0.3083 9.61e-09 2z86:A, 2z86:B, 2z86:D, 2z87:A, 2z87:B
4 2z86:C 603 90 0.0385 0.0348 0.2333 6.2 2z86:A, 2z86:B, 2z86:D, 2z87:A, 2z87:B
5 1h7q:A 240 126 0.0642 0.1458 0.2778 1.44e-07 1h7l:A, 1qgq:A, 1qgs:A
6 1h7q:A 240 44 0.0275 0.0625 0.3409 8.7 1h7l:A, 1qgq:A, 1qgs:A
7 5tze:C 349 249 0.1138 0.1777 0.2490 9.15e-07 5tze:E, 5tzj:C, 5tzj:A, 5tzk:C
8 6yv8:A 346 122 0.0569 0.0896 0.2541 1.08e-05 6yv8:B, 6yv9:A, 6yv9:B
9 6pxu:B 532 123 0.0679 0.0695 0.3008 6.80e-05 6pxu:A
10 5mlz:A 355 121 0.0642 0.0986 0.2893 3.67e-04 5mm0:A, 5mm1:A
11 8bz6:A 606 107 0.0550 0.0495 0.2804 0.005 8bz6:B, 8bz6:C, 8bz6:D, 8bz6:E, 8bz6:F, 8bz7:A, 8bz7:B, 8bz7:C, 8bz7:D, 8bz7:E, 8bz7:F, 8bz8:A, 8bz8:B, 8bz8:C, 8bz8:D, 8bz8:E, 8bz8:F
12 6h0b:B 521 123 0.0606 0.0633 0.2683 0.19
13 5eke:C 307 171 0.0697 0.1238 0.2222 0.21 5eke:A, 5eke:B, 5eke:D, 5ekp:C, 5ekp:A, 5ekp:B, 5ekp:D
14 3ckq:A 302 138 0.0569 0.1026 0.2246 0.61 3ckn:A, 3cko:A, 3ckv:A
15 3f1y:A 318 154 0.0734 0.1258 0.2597 0.63 3f1y:C, 3kia:A, 3kia:C, 3o3p:A, 3o3p:B
16 3agn:A 114 36 0.0257 0.1228 0.3889 1.9 3ago:A, 3ahw:A, 1rtu:A
17 7e6i:A 484 29 0.0312 0.0351 0.5862 2.4
18 9cc9:A 850 100 0.0404 0.0259 0.2200 2.8 9cc8:A, 9cc8:B, 9cc8:C, 9cc8:D, 9cc8:E, 9cc8:F, 9cc9:B, 9cc9:C, 9cc9:D, 9cc9:E, 9cc9:F, 9cc9:G, 9cc9:H, 9cc9:I, 9cc9:J, 9cc9:K, 9cc9:L
19 8qbb:A 271 108 0.0514 0.1033 0.2593 5.8 8qbb:J, 8qbb:F, 8qbb:B, 8qbb:C, 8qbb:I, 8qbb:D, 8qbb:E, 8qbb:K, 8qbb:L, 8qbb:G, 8qbb:M, 8qbb:H, 8qbb:N, 8qbd:A, 8qbd:B, 8qbd:C, 8qbd:I, 8qbd:D, 8qbd:J, 8qbd:E, 8qbd:K, 8qbd:F, 8qbd:L, 8qbd:G, 8qbd:M, 8qbd:H, 8qbd:N, 8qbf:A, 8qbf:B
20 3ef1:A 372 87 0.0440 0.0645 0.2759 8.8 3ef0:A, 4xpz:A, 4xq0:A
21 5f2k:A 358 65 0.0330 0.0503 0.2769 9.3 5f2k:B, 5f2n:A, 5f2n:B, 5f2o:A, 5f2o:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218