Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●D-I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●D-QUARK ●DRfold ●DRfold2 ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred ●TCRfinder

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●DeepMSA2 ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
>protein
TTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLRD

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1mdy:A 68 62 1.0000 0.9118 1.0000 2.59e-39 1mdy:B, 1mdy:C, 1mdy:D
2 7z5i:A 56 53 0.7581 0.8393 0.8868 4.07e-29 7z5i:B, 7z5k:A, 7z5k:B
3 8osb:B 66 56 0.3387 0.3182 0.3750 3.50e-07
4 2ypa:A 67 62 0.4194 0.3881 0.4194 4.15e-06 2ypb:A
5 2ql2:B 59 59 0.3548 0.3729 0.3729 9.78e-05 2ql2:D
6 1hlo:A 80 55 0.2419 0.1875 0.2727 0.004
7 2ypb:B 74 60 0.3387 0.2838 0.3500 0.005 2ql2:A, 2ql2:C, 2ypa:B
8 5eyo:C 88 53 0.2419 0.1705 0.2830 0.015 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
9 6od3:A 62 59 0.3387 0.3387 0.3559 0.062 6od3:B, 6od3:H, 6od3:E, 6od3:F, 6od4:A, 6od4:B, 6od5:A, 6od5:B, 6od5:C, 6od5:D, 8osb:A
10 7b1g:A 691 48 0.2903 0.0260 0.3750 0.30 7b05:A, 7b05:D, 7b05:B, 7b05:C, 7b0s:A, 7b0s:D, 7b0s:B, 7b0s:C, 7b16:A, 7b16:B, 7b16:C, 7b16:D, 7b1g:C, 7b1g:B, 7b1g:D, 6g1k:A, 6g1k:B, 6g1k:D, 6g1k:C
11 8iwo:A 956 50 0.2258 0.0146 0.2800 0.70 8iwo:B, 8j2m:A, 8j2m:B
12 5i50:B 96 54 0.2742 0.1771 0.3148 1.1 5i50:A, 1nkp:A, 1nkp:D
13 8ix9:C 314 17 0.1290 0.0255 0.4706 3.7 8ix9:B, 8ix9:A, 8ixh:A, 8ixh:B, 8ixh:C, 8ixm:A, 8ixm:B
14 2bff:A 392 35 0.2258 0.0357 0.4000 3.7 2beu:A, 2bev:A, 2bew:A, 2bfd:A, 2bfe:A, 1dtw:A, 2j9f:A, 2j9f:C, 1ols:A, 1olx:A, 1u5b:A, 1wci:A, 1x7z:A
15 1v1m:A 372 35 0.2258 0.0376 0.4000 4.0 2bfb:A, 2bfc:A, 1olu:A, 1v11:A, 1v16:A, 1x7w:A, 1x7x:A, 1x7y:A, 1x80:A
16 3tgw:B 441 31 0.1613 0.0227 0.3226 4.4 3b2q:A, 3b2q:B, 3dsr:A, 3dsr:B, 3eiu:A, 3eiu:B, 3tiv:B
17 2koh:A 111 23 0.2097 0.1171 0.5652 5.9 9imp:A, 9imp:B, 9imp:C, 9imp:D, 9imp:E, 9imp:F, 6jue:L, 2k20:A
18 1am9:C 82 54 0.2903 0.2195 0.3333 6.3 1am9:D, 1am9:A, 1am9:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417