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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TTKEDVLEAVKERDVKFIRTQFTDTLGIIKSWAIPAEQLEEAFENGVMFDGSSIQGFTRIEESDMKLALDPSTFRILPWR
PATGAVARILGDVYLPDGNPFKGDPRYVLKTAIKEAEKMGFSMNVGPELEFFLFKLDANGNPTTELTDQGGYFDFAPLDR
AQDVRRDIDYALEHMGFQIEASHHEVAPSQHEIDFRFGDVLCTADNVVTFKYVVKSIAYHKGYYASFMPKPLFGVNGSGM
HSNQSLFKDGKNVFYDPDTPTKLSQDAMYYIGGLLKHIREFTAVTNPVVNSYKRLVPGYEAPVYISWSAQNRSSLIRIPA
TRGNGTRIELRCPDPACNPYLAFALMLRAGLEGIKNKIDPGEPTNVNIFHLSDKEREERGIRSLPADLKEAIDEMKGSKF
VKEALGEHVFSHYLCAKEMEWDEYKAVVHPWELSRYLSML

The query sequence (length=440) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ufj:B 444 440 0.9955 0.9865 0.9955 0.0 8tfb:A, 8tfb:B, 8tfb:C, 8tfb:D, 8tfb:L, 8tfb:M, 8tfb:O, 8tfb:P, 8tfb:Q, 8tfb:V, 8tfb:X, 8tfb:Y, 8tfk:A, 8tfk:B, 8tfk:C, 8tfk:D, 8tfk:E, 8tfk:F, 8tfk:G, 8tfk:H, 8tfk:I, 8tfk:J, 8tfk:K, 8tfk:L, 8ufj:A, 8ufj:C
2 7tfa:B 441 439 0.5886 0.5873 0.5900 0.0 7tdp:A, 7tdp:C, 7tdp:B, 7tfa:L, 7tfa:Q, 7tfa:E, 7tfa:F, 7tfa:J, 7tfa:K, 7tfa:W, 7tfa:R, 7tfa:S, 7tfa:T, 7tfa:X, 7tfb:B, 7tfb:S, 7tfb:D, 7tfb:U, 7tfb:F, 7tfb:Y, 7tfb:J, 7tfb:K, 7tfb:Z, 7tfb:L, 7tfb:b, 7tfb:N, 7tfb:V, 7tfb:T, 7tfd:B, 7tfd:E, 7tfd:F, 7tfd:J, 7tfd:K, 7tfd:L, 7tfd:Q, 7tfd:R, 7tfd:S, 7tfd:T, 7tfd:W, 7tfd:X
3 4s0r:D 447 438 0.5886 0.5794 0.5913 0.0 4lnf:A, 4lnf:B, 4lnf:C, 4lnf:D, 4lnf:E, 4lnf:F, 4lnf:G, 4lnf:H, 4lnf:I, 4lnf:J, 4lnf:K, 4lnf:L, 4lni:A, 4lni:B, 4lni:C, 4lni:D, 4lni:E, 4lni:F, 4lni:G, 4lni:H, 4lni:I, 4lni:J, 4lni:K, 4lni:L, 4lnk:A, 4lnk:B, 4lnk:C, 4lnk:D, 4lnk:E, 4lnk:F, 4lnn:A, 4lnn:B, 4lnn:C, 4lnn:D, 4lnn:E, 4lnn:F, 4lnn:G, 4lnn:H, 4lnn:I, 4lnn:J, 4lnn:K, 4lnn:L, 4lno:A, 4lno:B, 4lno:C, 4lno:D, 4lno:E, 4lno:F, 4s0r:A, 4s0r:C, 4s0r:F, 4s0r:G, 4s0r:I, 4s0r:E, 4s0r:L, 4s0r:M, 4s0r:J, 4s0r:K, 4s0r:N, 4s0r:B, 4s0r:H, 7tfc:B, 7tfc:C, 7tfc:Q, 7tfc:R, 7tfc:F, 7tfc:G, 7tfc:H, 7tfc:P, 7tfc:O, 7tfc:S, 7tfc:I, 7tfc:N, 7tfc:T, 7tfc:A
4 8oox:B 438 438 0.5886 0.5913 0.5913 0.0 8oow:A, 8oow:B, 8oow:C, 8oow:D, 8oow:E, 8oow:F, 8oow:G, 8oow:H, 8oow:I, 8oow:J, 8oow:K, 8oow:L, 8oox:A, 8ooz:A, 8ooz:B, 8ooz:C, 8ooz:D, 8ooz:E, 8ooz:F, 8ooz:K, 8ooz:G, 8ooz:H, 8ooz:I, 8ooz:J, 8ooz:L
5 7tf9:S 443 439 0.5523 0.5485 0.5535 0.0 7ten:A, 7ten:E, 7ten:B, 7ten:D, 7ten:H, 7ten:J, 7ten:M, 7ten:O, 7ten:Q, 7ten:S, 7ten:U, 7ten:W, 7tf9:H, 7tf9:A, 7tf9:Q, 7tf9:C, 7tf9:O, 7tf9:B, 7tf9:P, 7tf9:R, 7tf9:I, 7tf9:T, 7tf9:F, 7tf9:G, 7tf9:N, 7tfe:A, 7tfe:G, 7tfe:H, 7tfe:I, 7tfe:B, 7tfe:C, 7tfe:J, 7tfe:D, 7tfe:E, 7tfe:F, 7tfe:K, 7tfe:L
6 7tdv:C 443 437 0.5523 0.5485 0.5561 0.0 7tdv:A, 7tdv:D, 7tdv:E, 7tdv:B, 7tdv:H, 7tf6:C, 7tf6:O, 7tf6:R, 7tf6:F, 7tf6:N, 7tf6:H, 7tf6:L, 7tf6:T, 7tf6:A, 7tf6:S, 7tf6:G, 7tf6:B
7 8ooo:A 447 448 0.5500 0.5414 0.5402 4.58e-176 8ooo:L, 8ooo:B, 8ooo:H, 8ooo:C, 8ooo:J, 8ooo:D, 8ooo:F, 8ooo:E, 8ooo:G, 8ooo:I, 8ooo:K, 8ooq:A, 8ooq:L, 8ooq:B, 8ooq:H, 8ooq:C, 8ooq:J, 8ooq:D, 8ooq:F, 8ooq:E, 8ooq:G, 8ooq:I, 8ooq:K, 8ooq:P, 8ooq:c, 8ooq:Q, 8ooq:Y, 8ooq:S, 8ooq:a, 8ooq:T, 8ooq:V, 8ooq:U, 8ooq:X, 8ooq:Z, 8ooq:b
8 1f1h:A 468 478 0.4455 0.4188 0.4100 1.96e-103 1f1h:B, 1f1h:C, 1f1h:D, 1f1h:E, 1f1h:F, 1f1h:G, 1f1h:H, 1f1h:I, 1f1h:J, 1f1h:K, 1f1h:L, 1f52:A, 1f52:B, 1f52:C, 1f52:D, 1f52:E, 1f52:F, 1f52:G, 1f52:H, 1f52:I, 1f52:J, 1f52:K, 1f52:L, 1fpy:A, 1fpy:B, 1fpy:C, 1fpy:D, 1fpy:E, 1fpy:F, 1fpy:G, 1fpy:H, 1fpy:I, 1fpy:J, 1fpy:K, 1fpy:L, 2gls:A, 2gls:B, 2gls:C, 2gls:D, 2gls:E, 2gls:F, 2gls:G, 2gls:H, 2gls:I, 2gls:J, 2gls:K, 2gls:L
9 1hto:A 477 478 0.4159 0.3836 0.3828 1.51e-94 4acf:A, 4acf:B, 4acf:C, 4acf:D, 4acf:E, 4acf:F, 2bvc:A, 2bvc:B, 2bvc:C, 2bvc:D, 2bvc:E, 2bvc:F, 1hto:B, 1hto:C, 1hto:D, 1hto:E, 1hto:F, 1hto:G, 1hto:H, 1hto:I, 1hto:J, 1hto:K, 1hto:L, 1hto:M, 1hto:N, 1hto:O, 1hto:P, 1hto:Q, 1hto:R, 1hto:S, 1hto:T, 1hto:U, 1hto:V, 1hto:W, 1hto:X, 1htq:A, 1htq:B, 1htq:C, 1htq:D, 1htq:E, 1htq:F, 1htq:G, 1htq:H, 1htq:I, 1htq:J, 1htq:K, 1htq:L, 1htq:M, 1htq:N, 1htq:O, 1htq:P, 1htq:Q, 1htq:R, 1htq:S, 1htq:T, 1htq:U, 1htq:V, 1htq:W, 1htq:X, 2wgs:A, 2wgs:B, 2wgs:C, 2wgs:D, 2wgs:E, 2wgs:F, 2wgs:G, 2wgs:H, 2wgs:I, 2wgs:J, 2wgs:K, 2wgs:L, 2whi:A, 2whi:B, 2whi:C, 2whi:D, 2whi:E, 2whi:F, 4xyc:A, 4xyc:B, 4xyc:C, 4xyc:D, 4xyc:E, 4xyc:F, 4xyc:G, 4xyc:H, 4xyc:I, 4xyc:J, 4xyc:K, 4xyc:L, 4xyc:M, 4xyc:N, 4xyc:O, 4xyc:P, 4xyc:Q, 4xyc:R, 4xyc:S, 4xyc:T, 4xyc:U, 4xyc:V, 4xyc:W, 4xyc:X, 3zxr:A, 3zxr:B, 3zxr:C, 3zxr:D, 3zxr:E, 3zxr:F, 3zxv:A, 3zxv:B, 3zxv:C, 3zxv:D, 3zxv:E, 3zxv:F
10 3ng0:A 465 479 0.4227 0.4000 0.3883 9.41e-93
11 5zlp:J 478 462 0.3909 0.3598 0.3723 6.24e-91 5zlp:A, 5zlp:B, 5zlp:C, 5zlp:D, 5zlp:E, 5zlp:F, 5zlp:H, 5zlp:K, 5zlp:L, 5zlp:G, 5zlp:I
12 1lgr:A 445 478 0.4205 0.4157 0.3870 1.37e-89 1lgr:B, 1lgr:C, 1lgr:D, 1lgr:E, 1lgr:F, 1lgr:G, 1lgr:H, 1lgr:I, 1lgr:J, 1lgr:K, 1lgr:L, 2lgs:A, 2lgs:B, 2lgs:C, 2lgs:D, 2lgs:E, 2lgs:F, 2lgs:G, 2lgs:H, 2lgs:I, 2lgs:J, 2lgs:K, 2lgs:L
13 4s17:A 452 475 0.3955 0.3850 0.3663 4.84e-86 4s17:B, 4s17:C, 4s17:D, 4s17:E, 4s17:F
14 7cqw:A 430 434 0.3136 0.3209 0.3180 4.04e-65 7cqn:A, 7cqn:B, 7cqn:C, 7cqq:A, 7cqq:B, 7cqq:C, 7cqu:A, 7cqu:B, 7cqu:C, 7cqw:B, 7cqw:C, 7cqx:A, 7cqx:B, 7cqx:C
15 8wwu:B 492 485 0.3091 0.2764 0.2804 8.60e-51 8wwu:A, 8wwu:C, 8wwu:D, 8wwu:E, 8wwu:F, 8wwv:A, 8wwv:B, 8wwv:C, 8wwv:D, 8wwv:E, 8wwv:F, 8x6z:A, 8x6z:B, 8x6z:C, 8x6z:D, 8x6z:E, 8x6z:F
16 5dm3:C 396 366 0.2568 0.2854 0.3087 1.73e-45 5dm3:D, 5dm3:B, 5dm3:E, 5dm3:F
17 5dm3:A 374 375 0.2500 0.2941 0.2933 1.05e-44
18 4hpp:A 426 425 0.2477 0.2559 0.2565 5.73e-31
19 8ecy:A 371 317 0.1795 0.2129 0.2492 2.27e-10 8dnu:A, 8ecy:J, 8ecy:L, 8ecy:Q, 8ecy:H, 8ecy:D, 8ecy:B, 8ecy:F, 8ecy:I, 8ecy:M, 2ojw:A, 2ojw:B, 2ojw:C, 2ojw:D, 2ojw:E, 2qc8:A, 2qc8:B, 2qc8:C, 2qc8:D, 2qc8:E, 2qc8:F, 2qc8:G, 2qc8:H, 2qc8:I, 2qc8:J, 2uu7:A, 2uu7:B, 2uu7:C, 2uu7:D, 2uu7:E, 2uu7:F, 2uu7:G, 2uu7:H, 2uu7:I, 2uu7:J, 2uu7:K, 2uu7:L, 2uu7:M, 2uu7:N, 2uu7:O
20 3o6x:A 638 139 0.0977 0.0674 0.3094 1.56e-08 3o6x:B, 3o6x:C, 3o6x:D, 3o6x:E, 3o6x:F
21 2d3a:A 353 310 0.1727 0.2153 0.2452 3.37e-08 2d3a:B, 2d3a:C, 2d3a:D, 2d3a:E, 2d3a:F, 2d3a:G, 2d3a:H, 2d3a:I, 2d3a:J, 2d3b:A, 2d3b:B, 2d3b:C, 2d3b:D, 2d3b:E, 2d3b:G, 2d3b:F, 2d3b:I, 2d3b:J, 2d3b:H, 2d3c:A, 2d3c:B, 2d3c:C, 2d3c:D, 2d3c:E, 2d3c:F, 2d3c:G, 2d3c:H, 2d3c:I, 2d3c:J
22 7u5n:A 343 315 0.1636 0.2099 0.2286 2.06e-06 7u5n:B, 7u5n:C, 7u5n:D, 7u5n:E, 7u5n:F, 7u5n:G, 7u5n:H, 7u5n:I, 7u5n:J
23 8b37:B 681 121 0.0795 0.0514 0.2893 1.65e-04 8b37:A
24 7xms:R 276 78 0.0500 0.0797 0.2821 1.3 7xmt:R
25 7ufg:B 1182 64 0.0477 0.0178 0.3281 1.7 8d8o:B
26 2b30:A 284 46 0.0386 0.0599 0.3696 3.2 2b30:B, 2b30:C, 2b30:D
27 2ash:A 361 67 0.0432 0.0526 0.2836 3.4 2ash:B, 2ash:C, 2ash:D
28 8ouw:K 656 80 0.0500 0.0335 0.2750 3.8
29 5o0x:A 261 128 0.0591 0.0996 0.2031 3.9 8cak:A, 8cal:A, 8cao:A, 8cap:A, 8cap:E, 8cap:B, 8cap:C, 8cb0:A
30 8xip:A 285 78 0.0455 0.0702 0.2564 4.2 8xio:A
31 7sf2:A 586 55 0.0386 0.0290 0.3091 4.4 7sf2:B, 7sf2:C, 7sf2:D, 7sf2:E, 7sf2:F
32 1u3c:A 485 49 0.0386 0.0351 0.3469 4.8 1u3d:A
33 2j7q:A 232 48 0.0341 0.0647 0.3125 5.2 2j7q:C
34 8xiq:A 289 81 0.0477 0.0727 0.2593 5.6 8xir:A
35 1i8q:A 814 36 0.0318 0.0172 0.3889 5.7 1lxm:A
36 8hsg:I 1096 47 0.0364 0.0146 0.3404 5.9 3aoi:C, 3aoi:H, 3aoi:M, 4gzy:C, 4gzz:C
37 2a68:C 1119 47 0.0364 0.0143 0.3404 6.0 2a68:M, 2a69:C, 2a69:M, 2a6h:C, 2a6h:M, 3aoh:C, 2be5:C, 2be5:M, 6cuu:C, 5d4c:C, 5d4c:M, 5d4d:C, 5d4d:M, 5d4e:C, 5d4e:M, 3dxj:C, 3dxj:M, 5e17:C, 5e18:C, 7eh0:C, 7eh1:C, 7eh2:C, 7eh2:M, 3eql:C, 3eql:M, 4g7h:C, 4g7h:M, 4g7o:C, 4g7o:M, 4g7z:C, 4g7z:M, 8hsr:I, 5i2d:C, 5i2d:N, 1i6v:C, 1iw7:C, 1iw7:M, 6kqd:C, 6kqd:M, 6kqe:C, 6kqf:C, 6kqg:C, 6kqh:C, 6kql:C, 6kqm:C, 6kqn:C, 6l74:C, 6lts:C, 6m6a:C, 6m6c:C, 7mlb:C, 7mli:C, 7mlj:C, 4mq9:C, 2o5i:C, 2o5i:M, 2o5j:C, 2o5j:M, 4oin:C, 4oio:C, 4oip:C, 4oiq:C, 4oir:C, 6ovr:C, 6ovy:C, 6ow3:C, 6oy5:C, 6oy6:C, 6oy7:C, 6p70:C, 6p71:C, 2ppb:C, 2ppb:M, 4q4z:C, 4q5s:C, 7rdq:C, 1smy:C, 1smy:M, 5tmc:C, 5tmf:C, 5vo8:C, 5voi:C, 8w8n:C, 8w8o:C, 8w8p:C, 6wox:C, 6woy:C, 4wqs:C, 4wqs:M, 5x21:C, 5x22:C, 5x22:M, 4xln:C, 4xln:I, 4xlr:C, 4xlr:I, 1ynj:C, 1ynn:C, 1zyr:C, 1zyr:M
38 8zcj:G 275 31 0.0273 0.0436 0.3871 6.1 8x8l:R, 8x8n:R, 8zbe:A
39 5d6j:A 630 68 0.0455 0.0317 0.2941 6.4 5ey8:A, 5ey8:B, 5ey8:C, 5ey8:D, 5ey8:E, 5ey8:F, 5ey8:G, 5ey8:H, 5icr:A, 5icr:B, 5icr:C, 5icr:D
40 6yxx:AW 278 56 0.0409 0.0647 0.3214 7.4 7aoi:AW, 6hiv:AW, 6hix:AW, 6yxy:AW
41 7yb9:A 430 43 0.0273 0.0279 0.2791 7.8 7bmi:A, 7bmj:A, 7bmj:C, 7e6j:A, 5jqy:A, 5jtc:A, 5jz6:A, 5jz8:A, 5jza:A, 5jzu:A, 6q9f:A, 6q9i:A, 6rk9:A, 6rk9:B, 7yb8:A, 7yba:A, 7ybb:A, 7ybc:A, 6yyu:A, 6yyv:A, 6yyw:A, 6yyx:A, 6yyy:A, 6z6q:A, 6z6r:A
42 8i9z:CY 382 54 0.0432 0.0497 0.3519 8.2
43 5wtk:A 1215 79 0.0455 0.0165 0.2532 8.5 7dmq:A
44 4oe4:B 481 64 0.0523 0.0478 0.3594 8.7 4oe4:A
45 6i71:A 353 72 0.0432 0.0538 0.2639 8.8 6i71:B, 6i72:A, 6i72:B, 6i73:A, 6i73:B, 6yjw:A, 6yjw:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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