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BioLiP
>protein
TTHFTVADRWGNVVSYTTTIEQLFGTGIMVPDYGVILNNELTDFDAIPGGANEVQPNKRPLSSMTPTILFKDDKPVLTVG
SPGGATIISSVLQTILYHIEYGMELKAAVEEPRIYTNSMSSYRYEDGVPKDVLSKLNGMGHKFGTSPVDIGNVQSISIDH
ENGTFKGVADSSRNGAAIGINLK

The query sequence (length=183) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3a75:D 184 183 1.0000 0.9946 1.0000 7.09e-135 3a75:B, 3whs:B
2 4otu:B 182 182 0.7923 0.7967 0.7967 2.90e-108 5xlu:B, 5y8x:B, 5y9b:B
3 5bpk:C 188 170 0.4098 0.3989 0.4412 1.23e-39 5bpk:D, 3fnm:B, 3fnm:D, 2qm6:B, 2qm6:D, 2qmc:B, 2qmc:D
4 5b5t:B 190 181 0.4044 0.3895 0.4088 2.89e-37 5b5t:D, 2dbw:B, 2dbw:D, 2dbx:B, 2dbx:D, 2dg5:B, 2dg5:D, 2e0x:B, 2e0x:D, 2z8i:B, 2z8i:D, 2z8j:B, 2z8j:D, 2z8k:B, 2z8k:D
5 7d9w:B 194 197 0.3443 0.3247 0.3198 5.12e-26 7d9e:B, 7d9w:D, 7d9x:B, 7d9x:D, 5zjg:B, 5zjg:D
6 4gdx:B 189 190 0.3388 0.3280 0.3263 6.37e-25 4gg2:B, 7la5:B, 7lbc:B, 7ld9:B, 5v4q:B, 6xpb:B, 6xpc:B, 4zbk:B, 4zc6:B, 4zcg:B
7 3ga9:S 167 178 0.3279 0.3593 0.3371 6.49e-17 3g9k:S
8 2jah:C 246 40 0.0820 0.0610 0.3750 2.7 2jah:A, 2jah:B, 2jah:D, 2jap:A, 2jap:B, 2jap:C, 2jap:D
9 5ndx:A 606 65 0.0929 0.0281 0.2615 4.3
10 7egv:A 590 34 0.0656 0.0203 0.3529 8.5 7egv:B, 7ehe:A, 7ehe:B
11 4ctf:AZ 246 56 0.0874 0.0650 0.2857 9.1 4ctf:A0, 4ctf:A1, 4ctf:A2, 4ctf:A3, 4ctf:A4, 4ctf:A5, 4ctf:A6, 4ctf:A7, 4ctf:A8, 4ctf:AA, 4ctf:AB, 4ctf:AC, 4ctf:AD, 4ctf:AE, 4ctf:AF, 4ctf:AG, 4ctf:AH, 4ctf:AI, 4ctf:AJ, 4ctf:AK, 4ctf:AL, 4ctf:AM, 4ctf:AN, 4ctf:AO, 4ctf:AP, 4ctf:AQ, 4ctf:AR, 4ctf:Ao, 4ctf:AS, 4ctf:AT, 4ctf:AU, 4ctf:AV, 4ctf:AW, 4ctf:AX, 4ctf:AY, 4ctf:A9, 4ctf:An, 4ctf:Aa, 4ctf:Ab, 4ctf:Ac, 4ctf:Ad, 4ctf:Ae, 4ctf:Af, 4ctf:Ag, 4ctf:Ah, 4ctf:Ai, 4ctf:Aj, 4ctf:Ak, 4ctf:Al, 4ctf:Am, 4ctf:BA, 4ctf:BB, 4ctf:BC, 4ctf:BD, 4ctf:BE, 4ctf:BF, 4ctf:BG, 4ctf:BH, 4ctf:BI, 2wff:1, 2ws9:1, 2xbo:1
12 3iwk:H 497 40 0.0765 0.0282 0.3500 9.1 3iwk:A, 3iwk:B, 3iwk:C, 3iwk:D, 3iwk:E, 3iwk:F, 3iwk:G, 3iwk:I, 3iwk:J, 3iwk:K, 3iwk:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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