Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TTHFSIVDKDGNAVSNTYTLNWDFGSGVVVKGAGFLLNDEMDDFSSKPGVANAFGVVGSDANAIEPGKRMLSSMSPSIVT
RDGHVSLVLGTPGGSRIFTSIFQVLNNVYDFHLPLEKAVAAQRVHHQLLPKDTIYYDAYAPLTGKVADELKAMGYTLEDQ
GDNMGDIQAIRVNGKALETASDPRGRGVGMVVKP

The query sequence (length=194) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7d9w:B 194 194 0.9948 0.9948 0.9948 2.40e-142 7d9e:B, 7d9w:D, 7d9x:B, 7d9x:D, 5zjg:B, 5zjg:D
2 5bpk:C 188 188 0.4794 0.4947 0.4947 1.33e-55 5bpk:D, 3fnm:B, 3fnm:D, 2qm6:B, 2qm6:D, 2qmc:B, 2qmc:D
3 5b5t:B 190 185 0.4845 0.4947 0.5081 3.16e-55 5b5t:D, 2dbw:B, 2dbw:D, 2dbx:B, 2dbx:D, 2dg5:B, 2dg5:D, 2e0x:B, 2e0x:D, 2z8i:B, 2z8i:D, 2z8j:B, 2z8j:D, 2z8k:B, 2z8k:D
4 4gdx:B 189 135 0.3351 0.3439 0.4815 3.30e-31 4gg2:B, 7la5:B, 7lbc:B, 7ld9:B, 5v4q:B, 6xpb:B, 6xpc:B, 4zbk:B, 4zc6:B, 4zcg:B
5 4otu:B 182 194 0.3351 0.3571 0.3351 2.16e-29 5xlu:B, 5y8x:B, 5y9b:B
6 3a75:D 184 197 0.3247 0.3424 0.3198 9.70e-26 3a75:B, 3whs:B
7 3ga9:S 167 160 0.2423 0.2814 0.2938 1.53e-13 3g9k:S
8 3dye:A 302 111 0.1392 0.0894 0.2432 0.42 3dzt:A
9 4i6z:B 200 69 0.0979 0.0950 0.2754 0.64 4i76:A
10 4zda:A 735 56 0.0979 0.0259 0.3393 0.68 4zda:B, 4zda:C, 4zda:D, 4zda:E, 4zda:F
11 8b6f:A5 282 69 0.0876 0.0603 0.2464 1.1 8bqs:A5
12 8dzr:A 258 52 0.0825 0.0620 0.3077 1.7
13 7ymi:1 329 25 0.0619 0.0365 0.4800 5.2 7ymi:5, 7ymm:11, 7ymm:21, 7ymm:31, 7ymm:41
14 5gm6:Y 598 131 0.1289 0.0418 0.1908 6.2
15 7olz:C 129 99 0.1340 0.2016 0.2626 6.7
16 7crc:B 1112 54 0.0825 0.0144 0.2963 9.5 7crc:A, 7crc:C, 7crc:D, 7xoz:A, 7xoz:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218