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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TTEPVKDHRRRRAAAIISHVEPETFEDENDQQLLPNMNATWVDQRGAWIIHVVIIILLKLFYNLFPGVTTEWSWTLTNMT
YVIGSYVMFHLIKGTPFDFNGGAYDNLTMWEQIDDETLYTPSRKFLISVPIALFLVSTHYAHYDLKLFSWNCFLTTFGAV
VPKLPVTHRLRISIPGITGRAQIS

The query sequence (length=184) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8c80:A 184 184 1.0000 1.0000 1.0000 3.37e-138 8c81:A, 8c82:A, 8c82:E
2 8iaj:D 182 183 0.7500 0.7582 0.7541 1.13e-103 8iaj:H, 8iam:D, 8iam:H, 8qof:A, 8qof:E, 8qog:A
3 7yiu:D 153 138 0.2826 0.3399 0.3768 2.44e-23 7cqi:A, 7cqk:A, 6m4o:A, 7yiy:D
4 7yjk:D 156 144 0.2717 0.3205 0.3472 2.12e-20 7yjk:H, 7yjm:D, 7yjn:D, 7yjo:D
5 4i8v:A 477 72 0.1196 0.0461 0.3056 0.56 6dwm:A, 6dwm:B, 6dwm:C, 6dwm:D, 6dwn:A, 6dwn:B, 6dwn:C, 4i8v:B, 4i8v:C, 4i8v:D, 6o5y:A, 6o5y:B, 6o5y:C, 6o5y:D, 6udl:A, 6udl:B, 6udl:C, 6udl:D, 6udm:A, 6udm:B, 6udm:C, 6udm:D
6 5xy3:H 192 96 0.1359 0.1302 0.2604 1.7
7 4are:A 678 25 0.0761 0.0206 0.5600 6.0 2y50:A, 2y6i:A, 7z5u:A, 7zbv:A
8 6ici:A 585 71 0.0870 0.0274 0.2254 7.7
9 4hg6:A 747 45 0.0761 0.0187 0.3111 9.6 5eiy:A, 5ej1:A, 5ejz:A, 4p00:A, 4p02:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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