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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TTAQHPTDEDLLARVLVPYKDHCKYLRSAVVTEGRAVARCEFAIPESCYIDDTGHLNSVEVNICYNQMMYYLVAKSVKEG
LLAGFESWTLDDFWKHQLPDILIARFASNFRRPVNPRAFSGEMEFQSVTRRAPAGPFLHAETAYRYWDADSGRCDGEAVL
AFVNI

The query sequence (length=165) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5wsy:B 165 165 1.0000 1.0000 1.0000 3.86e-125 5wsy:A
2 2pz8:A 280 63 0.1091 0.0643 0.2857 0.43 2pz8:B, 2pza:A, 2pza:B
3 6c8q:A 268 79 0.1333 0.0821 0.2785 1.0 6c8q:B, 6c8q:C, 6c8q:G, 6c8q:D, 6c8q:F, 6c8q:E, 6c8q:H
4 8bmw:J 270 48 0.1030 0.0630 0.3542 4.1
5 5fzo:A 339 54 0.1152 0.0560 0.3519 5.3 5fzo:B, 2ypd:A, 2ypd:B
6 6br7:B 125 93 0.1576 0.2080 0.2796 7.9 6br7:A, 6vbf:A, 6vbf:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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