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BioLiP
>protein
TSWELKKQKRLEDKQFKERLKALKDEKEEARQAKITMLKERREKKEENERY

The query sequence (length=51) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ylg:5 78 51 1.0000 0.6538 1.0000 6.49e-28 6ft6:5, 3jct:5, 6m62:5, 7oh3:5, 7ohq:5, 7uoo:5, 7uqb:5, 7uqz:5, 7v08:5, 6ylh:5
2 8vi8:A 227 48 0.2549 0.0573 0.2708 3.4 8eyz:A, 8eyz:B, 8eyz:C, 8eyz:D, 8eyz:E, 8eyz:F, 8eyz:G, 8eyz:H, 8eyz:I, 8eyz:J, 8eyz:L, 8eyz:K, 8hnj:A, 8hnj:B, 8hnj:C, 8hnj:D, 8hnj:E, 8hnj:F, 8vi8:B, 8vi8:C, 8vi8:D, 8vi8:E, 8vi8:F, 1wdn:A
3 3vay:A 230 22 0.1765 0.0391 0.4091 6.4 3vay:B
4 2pyy:B 217 34 0.2157 0.0507 0.3235 8.9 2pyy:A, 2pyy:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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