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BioLiP
>protein
TSVEKFLIEKFGSVSDLMQLSEGEESRAFSFDVGGRGYVLRVNSCADGFYKDRYVYRHFASAALPIPEVLDIGEFSESLT
YCISRRAQGVTLQDLPETELPAVLQPVAEVMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDD
TVSASVAQALDELMLWAEDCPEVRHLVHAAFGSNNVLTDNGRITAVIDWSEAMFGDPLYEVANIFFWRPWLACMEQQARY
FERRHPELAGSPRLRAYMLRIGLDQLYQSLVDGNFDDAAWAQGRCDAIVRSGAGT

The query sequence (length=295) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3w0s:A 298 295 0.9797 0.9698 0.9797 0.0 3tyk:A, 3w0n:A, 3w0o:A, 3w0p:A, 3w0q:A, 3w0r:A
2 3ham:A 299 218 0.1525 0.1505 0.2064 0.007 4dca:A, 3ham:B, 3hav:A, 3hav:B, 3hav:C, 3uzr:A
3 8i85:A 280 43 0.0644 0.0679 0.4419 0.010 8i82:A, 8i84:A, 8i86:A, 8i89:A, 8i8g:A, 8i8h:A
4 5igi:A 300 84 0.0881 0.0867 0.3095 0.013 5igj:A, 5igp:A, 5igr:A, 5igs:A, 5igt:A
5 7f0b:A 282 43 0.0576 0.0603 0.3953 0.023 7f0c:A, 7f0f:A
6 5uxd:A 300 32 0.0475 0.0467 0.4375 0.11 5uxc:A, 5uxd:B
7 3dxp:A 329 226 0.1661 0.1489 0.2168 0.35
8 4e1z:A 288 87 0.0780 0.0799 0.2644 0.95 4e20:A
9 6a5n:A 502 53 0.0610 0.0359 0.3396 0.96
10 3f69:B 283 94 0.0915 0.0954 0.2872 0.97 6b2p:A, 3f61:A, 3f69:A, 2fum:A, 2fum:B, 2fum:C, 2fum:D, 6i2p:A, 6i2p:B, 1mru:A, 1mru:B, 1o6y:A, 3ori:A, 3ori:B, 3ori:C, 3ori:D, 3ork:A, 3orl:A, 3orm:A, 3oro:A, 3orp:A, 3ort:A, 5u94:A
11 1y9g:A 517 64 0.0712 0.0406 0.3281 1.4
12 7w15:A 294 54 0.0610 0.0612 0.3333 1.7 7w15:B, 7w19:A, 7w19:B, 7w1a:B, 7w1a:A
13 7ezt:B 727 23 0.0441 0.0179 0.5652 3.6
14 2rcc:C 311 66 0.0678 0.0643 0.3030 3.8 2rcc:B
15 2b0q:A 263 166 0.1186 0.1331 0.2108 5.6 2bkk:A, 2bkk:C, 1j7l:A, 1j7l:B, 1j7u:A, 1j7u:B, 1l8t:A, 3q2j:A, 3q2j:B, 3tm0:A
16 3d45:A 383 69 0.0644 0.0496 0.2754 6.1 2a1r:A, 2a1r:B
17 3tdw:A 302 207 0.1322 0.1291 0.1884 6.3 6ctz:A, 3tdv:A, 3tdv:B
18 3d45:B 373 69 0.0644 0.0509 0.2754 7.1 3ctr:A
19 7s3l:A 254 52 0.0475 0.0551 0.2692 7.7
20 2vvt:A 269 47 0.0441 0.0483 0.2766 7.9 2jfo:A, 2jfo:B, 2jfp:A, 2jfp:B, 2vvt:B
21 8bx8:C 3947 76 0.0610 0.0046 0.2368 8.1 7k58:C, 7k5b:C, 7kek:C
22 4dfb:B 301 34 0.0407 0.0399 0.3529 8.1 5c4k:A, 5c4l:A, 5c4l:B, 6cd7:B, 4dfb:A, 4dfu:A, 4dfu:B, 4dt8:A, 4dt8:B, 4dt9:A, 4dt9:B, 4dta:A, 4dta:B, 4dtb:A, 4dtb:B, 4n57:A, 4n57:B, 3sg8:A, 3sg8:B, 3sg9:A, 3sg9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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