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BioLiP
>protein
TSVDCTAYGPELRALAARLPRTPRADLYAFLDAAHTAAASLPGALATALDTFNAEGSEDGHLLLRGLPVEADADLPTTPS
STPAPEDRSLLTMEAMLGLVGRRLGLHTGYRELRSGTVYHDVYPSPGAHHLSSETSETLLEFHTEMAYHRLQPNYVMLAC
SRADHERTAATLVASVRKALPLLDERTRARLLDRRMPCCVDVAFRIAQVKPLYGDADDPFLGYDRELLAPEDPADKEAVA
ALSKALDEVTEAVYLEPGDLLIVDNFRTTHARTPFSPRWDGKDRWLHRVYIRTDRNGQLSGGERAGDVVAFTPRG

The query sequence (length=315) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ds1:A 323 323 1.0000 0.9752 0.9752 0.0 1drt:A, 1dry:A, 1gvg:A
2 6vwq:A 325 319 0.8127 0.7877 0.8025 0.0 6vwr:A
3 2og6:A 323 278 0.3079 0.3003 0.3489 2.59e-38 2og7:A
4 6f2a:C 326 281 0.2667 0.2577 0.2989 2.35e-26 6f2a:A, 6f2a:B, 6f2a:D, 6f2b:A, 6f2b:B, 6f2b:C, 6f2b:D, 6f6j:A, 6f6j:B, 6f6j:C, 6f6j:D
5 6daw:A 342 308 0.2952 0.2719 0.3019 2.78e-20 6daw:B
6 4m25:B 317 269 0.2603 0.2587 0.3048 7.59e-18 4m25:C, 4m25:D, 4m26:B, 4m27:B, 4m2f:B, 4m2g:B, 4m2i:B, 4m2i:C, 4m2i:D, 4ne0:B, 4ne0:D
7 6mp8:A 308 276 0.3016 0.3084 0.3442 3.11e-17
8 6alm:A 338 280 0.2984 0.2781 0.3357 2.43e-15 6aln:A, 6alo:A, 6alp:A, 6alq:A, 6alr:A, 6dax:A, 6daz:A, 6db2:A, 9eqf:A, 6mp9:A, 2wbo:A, 2wbp:A, 2wbq:A, 6y0n:A, 6y12:A
9 4ne0:A 337 284 0.2571 0.2404 0.2852 3.92e-15 4m25:A, 4m26:A, 4m26:C, 4m26:D, 4m27:A, 4m27:C, 4m27:D, 4m2c:B, 4m2c:C, 4m2c:D, 4m2e:B, 4m2e:C, 4m2e:D, 4m2f:A, 4m2f:C, 4m2f:D, 4m2g:A, 4m2g:C, 4m2g:D, 4m2i:A, 4ne0:C
10 7y5f:B 341 252 0.2476 0.2287 0.3095 8.29e-13 7vgn:A, 7y5f:A, 7y5i:A, 7y5i:B, 7y5p:A, 7y5p:B, 7yhe:A, 7yhe:B, 7yw9:A
11 6euo:C 354 179 0.1492 0.1328 0.2626 0.001 6euo:A, 6euo:B, 6euo:D, 6eur:A, 6eur:C, 6eur:D, 6exf:A, 6exf:C, 6exf:D, 6exh:A, 6exh:B, 6exh:C, 6exh:D, 6f9p:A, 6f9p:C, 6f9p:D
12 6npb:B 378 53 0.0667 0.0556 0.3962 0.032 6npb:A, 6npc:A, 6npc:B, 6npd:A, 6npd:B
13 2q4a:B 322 34 0.0444 0.0435 0.4118 0.16 2q4a:A, 1y0z:A, 1y0z:B
14 6f9p:B 289 193 0.1524 0.1661 0.2487 0.27
15 7tcl:X 259 39 0.0444 0.0541 0.3590 1.3
16 1nx4:C 250 23 0.0381 0.0480 0.5217 2.2 1nx4:A, 1nx8:A, 1nx8:C
17 4oj8:B 271 23 0.0381 0.0443 0.5217 2.4 1nx4:B, 1nx8:B, 4oj8:A, 4oj8:C
18 7msk:A 421 82 0.0794 0.0594 0.3049 2.9 7msk:B
19 1jr7:A 306 62 0.0508 0.0523 0.2581 7.9 8cdf:A, 6gpe:A, 6gpe:B, 6gpn:A, 6gpn:B, 6hl8:A, 6hl8:B, 6hl9:A, 6hl9:B, 2r6s:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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