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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TSRVDKCKKSDIIVSPSILSADFSRLGDEVRAIDQAGCDWVHIDVMDGRFVPNITIGPLVVEALRPVTDKVLDVHLMIVE
PELRIPDFAKAGADIISVHAEQSSTIHLHRTLNMVKDLGCKAGVVLNPGTSLSTIEEVLDVVDLILIMSVNPGFGGQKFI
ESQVAKIRNLKRMCNEKGVNPWIEVDGGVTPENAYKVIDAGANALVAGSAVFKAKSYRDAIHGIKVSKAP

The query sequence (length=230) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7b1w:F 234 230 1.0000 0.9829 1.0000 7.22e-170 7b1w:J, 7b1w:A, 7b1w:B, 7b1w:C, 7b1w:D, 7b1w:E, 7b1w:G, 7b1w:H, 7b1w:I, 7b1w:K, 7b1w:L
2 1rpx:A 230 229 0.7652 0.7652 0.7686 1.63e-131 1rpx:B, 1rpx:C
3 5umf:C 224 216 0.4478 0.4598 0.4769 2.43e-67 5umf:A, 5umf:B
4 7sbj:A 221 221 0.5000 0.5204 0.5204 1.83e-64 7sbj:B, 7sbj:C
5 2fli:C 219 218 0.4261 0.4475 0.4495 2.84e-64 2fli:A, 2fli:B, 2fli:D, 2fli:E, 2fli:F, 2fli:G, 2fli:H, 2fli:I, 2fli:J, 2fli:K, 2fli:L
6 7u5y:A 227 217 0.4304 0.4361 0.4562 2.60e-60 7u5y:B, 7u5y:C, 7u5y:D, 7u5y:E, 7u5y:F
7 4nu7:C 227 210 0.3870 0.3921 0.4238 2.39e-50 4nu7:A, 4nu7:B, 4nu7:D
8 1h1y:B 219 217 0.3696 0.3881 0.3917 2.67e-47 1h1z:A, 1h1z:B
9 3qc3:A 225 214 0.3565 0.3644 0.3832 6.75e-46 3ovp:A, 3ovp:B, 3ovq:A, 3ovq:B, 3ovr:A, 3ovr:B, 3qc3:B
10 3ct7:A 219 197 0.2957 0.3105 0.3452 1.92e-40 3ct7:B, 3ct7:C, 3ct7:D, 3ct7:E, 3ct7:F, 3ctl:A, 3ctl:B, 3ctl:C, 3ctl:D, 3ctl:E, 3ctl:F
11 1tqx:A 221 218 0.3043 0.3167 0.3211 1.67e-38 1tqx:B
12 2v82:A 205 51 0.0783 0.0878 0.3529 0.60
13 3bg5:A 1137 79 0.0826 0.0167 0.2405 0.91 3bg5:C, 8gk8:A, 8gk8:B, 3hb9:A, 3hb9:C, 3hbl:A, 3hbl:C, 4hnt:A, 4hnt:C, 4hnu:A, 4hnu:C, 4hnv:A, 4hnv:C
14 3ho8:D 934 79 0.0826 0.0203 0.2405 0.95
15 3bg5:B 1074 79 0.0826 0.0177 0.2405 0.96 3bg5:D, 8gk8:C, 3hb9:B, 3hb9:D, 3hbl:B, 3hbl:D, 4hnt:B, 4hnt:D, 4hnu:B, 4hnu:D, 4hnv:D, 3ho8:A, 3ho8:C, 3ho8:B
16 4hnv:B 1033 79 0.0826 0.0184 0.2405 1.0 8gk8:D
17 8ebc:C 355 35 0.0522 0.0338 0.3429 2.8 8ebc:A, 8ebc:B, 8ebc:D, 8ebc:F, 8ebc:E
18 2iss:B 285 61 0.0870 0.0702 0.3279 4.7 2iss:A, 2iss:C
19 3rj8:A 473 52 0.0783 0.0381 0.3462 5.6 3rja:A
20 3rtx:A 262 77 0.0913 0.0802 0.2727 5.7 3rtx:B
21 4gf0:A 208 47 0.0739 0.0817 0.3617 8.1 4gf0:B
22 6zu5:SU0 99 54 0.0739 0.1717 0.3148 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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