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BioLiP
>protein
TSLVLERSLNRVHLLGRVGQDPVLRNPVTIFSLATNEMWRDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDY
GEYMDKNNVRRQATTIIADNIIFLSDQ

The query sequence (length=107) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6rup:A 111 111 0.9533 0.9189 0.9189 1.88e-68 6rup:B, 8uzt:A, 8uzt:C, 8uzt:D
2 8uzt:B 100 107 0.8785 0.9400 0.8785 9.37e-62
3 3ulp:C 116 113 0.4019 0.3707 0.3805 8.59e-20 3ulp:A, 3ulp:B, 3ulp:D
4 1eqq:B 120 103 0.3364 0.3000 0.3495 1.65e-16 1eqq:A, 1eyg:A, 1eyg:B, 1eyg:C, 1eyg:D
5 5odn:D 106 106 0.3458 0.3491 0.3491 2.49e-15 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
6 6irq:C 104 98 0.3458 0.3558 0.3776 4.25e-15 6irq:A, 6irq:B, 6irq:D, 6jdg:C, 6jdg:A, 6jdg:B, 6jdg:D, 7vum:A, 7vum:C, 5yun:B, 5yun:A, 5yun:D
7 5odp:G 100 107 0.3271 0.3500 0.3271 3.43e-11 5odp:A
8 6bhx:C 102 104 0.3178 0.3333 0.3269 4.16e-07 6bhx:A, 6bhx:B
9 7dep:B 102 106 0.2897 0.3039 0.2925 9.49e-06
10 8gw5:A 99 96 0.2617 0.2828 0.2917 1.11e-05 7ym1:A
11 2vw9:A 108 45 0.1495 0.1481 0.3556 2.04e-05 2vw9:B
12 3udg:C 214 106 0.2430 0.1215 0.2453 3.06e-04 3udg:B, 3udg:A
13 3udg:C 214 78 0.2056 0.1028 0.2821 0.52 3udg:B, 3udg:A
14 3vdy:A 101 103 0.2617 0.2772 0.2718 0.002 3vdy:B
15 7seh:B 443 57 0.1402 0.0339 0.2632 1.4 7seh:A, 7sei:A, 6va0:A, 6va7:A, 6va8:A, 6va9:A, 6vaq:A
16 7zve:E 500 57 0.1402 0.0300 0.2632 1.5 2bh9:A, 2bhl:A, 2bhl:B, 6e07:L, 6e07:C, 6e07:F, 6e07:N, 6e07:Q, 6e07:T, 6e07:W, 6e07:B, 6e08:L, 6jyu:A, 1qki:A, 1qki:B, 1qki:C, 1qki:D, 1qki:E, 1qki:F, 1qki:G, 1qki:H, 7snh:A, 7snh:B, 7snh:C, 7snh:D, 7sni:A, 7sni:B, 7sni:C, 7sni:D, 7ual:A, 7ual:B, 7ual:C, 7ual:D, 7uc2:A, 7uc2:B, 7uc2:C, 7uc2:D, 5ukw:A, 7zvd:N
17 4faj:A 507 86 0.1869 0.0394 0.2326 2.8
18 4jqp:A 330 20 0.0935 0.0303 0.5000 2.9 4jqp:B
19 8cja:B 731 93 0.2243 0.0328 0.2581 4.7 8cjb:B, 8cjc:B, 8cmw:B, 7nyp:A, 7nyp:B, 7nys:A, 7nys:B, 7nz5:A, 7nz5:B, 7o0d:A, 1ru3:A, 7zkj:B, 7zkk:B, 7zkv:B
20 3mu3:A 140 26 0.1028 0.0786 0.4231 7.1 3mu3:B
21 7nkg:F 247 35 0.1028 0.0445 0.3143 8.2 7nkg:C, 7nkg:L, 7nkg:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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