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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TSLDGLPETQKYVYADEWGFSRVGADFPPGSHPSLFSQLLPQALFAFDARAAVAAVAVPLAAMAAGYGWLWYMHSIAPVW
QQALCAALIGTGYAGLFKVAHECAMMRFIPQMPGLQAALGTLLMAPALYSLPSWRLHHLHHLLHTNMLWQDVWGWHPLTK
VELADEMVRSGGSGGAAMAAARLVLTTPIKLFASVGHWLRSWDGLDLRHFHPASYVEVLSGWAAPLAFAGLVLPAVVSAG
GLSGFVSCYLAPWLVFHFWLSVLSLTAHTAPHIPWRAEGDGWDAGRAAVAGTVTLRLPRPLEVLLNNANYMLPQAVAPGL
PMWSAPAAYAVLAARLGPYLTEASMSLKLLTNHVTRWQIYDEEAHTYRPMEEVVDEIEADLQQLAAAAQQ

The query sequence (length=390) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8xqw:M 390 390 1.0000 1.0000 1.0000 0.0 8xqx:M
2 6m4k:A 496 90 0.0590 0.0464 0.2556 0.50 6m4l:A, 6m4m:A
3 8dq6:B 109 35 0.0410 0.1468 0.4571 1.1 8dq6:A, 8dq6:C
4 3bh4:A 483 63 0.0462 0.0373 0.2857 1.2 3bh4:B, 1e3x:A, 1e3z:A, 1e40:A, 1e43:A
5 5x9i:A 333 156 0.0974 0.1141 0.2436 1.2 5x9i:B
6 1bli:A 481 83 0.0564 0.0457 0.2651 1.6 1ob0:A, 6toy:A, 6toz:A, 6tp0:A, 6tp1:A, 6tp2:A
7 5b2o:A 1455 56 0.0385 0.0103 0.2679 2.6 5b2p:A, 5b2q:A
8 7n27:A 57 25 0.0231 0.1579 0.3600 2.9 7n27:D, 7n27:B, 7n27:C, 7n27:E, 7n27:F
9 6ba0:A 312 60 0.0462 0.0577 0.3000 3.3 6ba0:B, 6ba0:C, 6ba0:D
10 8duj:D 3865 38 0.0487 0.0049 0.5000 4.2
11 6wou:A 3921 57 0.0641 0.0064 0.4386 6.6 6wou:B, 6wou:C, 6wou:D, 6wov:A, 6wov:B, 6wov:C, 6wov:D
12 8dty:A 4004 57 0.0641 0.0062 0.4386 6.6 8dty:B, 8dty:C, 8dty:D
13 8dtz:A 4061 57 0.0641 0.0062 0.4386 6.6 8dtz:B, 8dtz:C, 8dtz:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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