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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TSINCKNIQSTQLTIEHLSKCMAFYQNKTSSPVVINEIISDASVDEQELIKSLNLNCNVIDRFISESSVIETQVYYEYIK
SQLCPLQVHDIFTINSASNIQWKALARSFTLGVCNTNPHKHICRCLESMQMCTSTKTDHAREMSIYYDGHPDRFEHDMKI
ILNIMRYIVPGLGRVLLDQIKQTKDYQALRHIQGKLSPKSQSNLQLKGFLEFVDFILGANVTIEKTPQTLTT

The query sequence (length=232) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6h3u:A 246 232 1.0000 0.9431 1.0000 1.14e-175 6h3t:A, 6h3t:B, 6h3u:B
2 4k36:A 381 52 0.0603 0.0367 0.2692 2.6 4k36:B, 4k37:A, 4k37:B, 4k38:B, 4k38:A, 4k39:B, 4k39:A
3 2dip:A 98 69 0.0733 0.1735 0.2464 2.9
4 6c0e:A 419 49 0.0647 0.0358 0.3061 2.9 6c0e:B
5 1isv:A 436 30 0.0474 0.0252 0.3667 6.3 2d20:A, 2d20:B, 2d22:A, 2d22:B, 2d23:A, 2d23:B, 2d24:A, 2d24:B, 1e0v:A, 1e0x:A, 1e0x:B, 2g3j:A, 5gqd:A, 5gqd:B, 5gqe:A, 5gqe:B, 1isv:B, 1isw:A, 1isw:B, 1isx:A, 1isx:B, 1isy:A, 1isy:B, 1isz:A, 1isz:B, 1it0:A, 1it0:B, 1od8:A, 1v0k:A, 1v0l:A, 1v0m:A, 1v0n:A, 1v6u:A, 1v6u:B, 1v6v:A, 1v6v:B, 1v6w:A, 1v6w:B, 1v6x:A, 1v6x:B
6 6lga:A 570 22 0.0474 0.0193 0.5000 7.0 6lga:B, 6lgb:A, 6lgb:B, 6lgc:A, 6lgc:B, 6lgd:A, 6lgd:B, 6lge:A, 6lge:B, 6lgf:A, 6lgf:B, 6lgg:A, 6lgg:B, 6lgh:A, 6lgh:B, 6lgi:A, 6lgi:B
7 5li0:D 275 41 0.0517 0.0436 0.2927 7.9 7asm:C, 7asn:F, 7asp:C, 6ddd:B, 6ddg:B, 6fxc:AC, 6fxc:BC, 5hkv:A, 5hl7:A, 6hma:C, 5nd8:D, 5nd9:D, 5ngm:AC, 7nhl:G, 7nhm:G, 5nrg:A, 8p2f:G, 8p2g:G, 8p2h:G, 7p48:C, 6s0x:C, 6s0z:C, 6s12:C, 6s13:C, 6sj6:D, 5t7v:L2, 5tcu:L2, 7ttu:B, 7ttw:B, 4wce:A, 4wf9:A, 4wfa:A, 4wfb:A, 6wqn:B, 6wqq:B, 6wrs:B, 6wru:B, 8y36:C, 8y37:C, 8y38:C, 8y39:C, 6yef:D
8 3j3v:C 277 33 0.0431 0.0361 0.3030 8.5 7aqc:C, 7aqd:C, 7as8:E, 7as9:E, 8buu:C, 6ha1:C, 6ha8:C, 6htq:C, 3j3w:C, 3j9w:BD, 5njt:W, 7o5b:Z, 7ope:E, 6ppf:C, 6ppk:C, 6pvk:C, 8qcq:C, 7qgu:C, 7qh4:C, 8qpp:Z, 7qv1:C, 7qv2:C, 7qv3:C, 8r55:Z, 8s1p:C, 8s1u:C, 7s9u:C, 7sae:C, 6tnn:W, 6tpq:W
9 2aig:P 201 139 0.1466 0.1692 0.2446 9.1 3aig:A, 4aig:A, 1iag:A
10 7b04:B 1120 39 0.0431 0.0089 0.2564 9.4 7b04:E, 7b04:H, 7b04:K, 7b04:N, 7b04:Q, 7b04:T, 7b04:W

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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