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BioLiP
>protein
TSIKPFQMEDLFELNPVNLDPLTENFNVSFYSQYLIEWPQLFYKSVETPNGQASGYMMAKTEGQLSKKEWHTHITAVTVL
DQYRRIGLASKLCLELENLTQVKDTLFIDLFVKVTNTLGRILYEKLGYSVFRRVVGYYGREIQKDRNKIDDSVDAFDMRK
LLPRENGEKVYVLPNEIVF

The query sequence (length=179) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5k18:B 179 179 1.0000 1.0000 1.0000 1.18e-133 5k04:B, 5k18:D
2 8g0l:A 158 165 0.4078 0.4620 0.4424 1.96e-49 7stx:A, 6vp9:A
3 6zmp:A 190 189 0.4134 0.3895 0.3915 1.43e-34 6zmp:B
4 4kvm:E 153 122 0.2235 0.2614 0.3279 5.28e-18 4kvm:F, 4kvm:G, 4kvm:H, 4kvo:E, 4kvo:F, 4kvo:G, 4kvo:H, 4kvx:A, 4kvx:B
5 5nnp:B 179 167 0.2458 0.2458 0.2635 1.31e-13 5nnp:F
6 6c95:B 160 163 0.2682 0.3000 0.2945 5.71e-13 6ppl:C, 6pw9:C
7 4hnx:B 213 181 0.2458 0.2066 0.2431 1.21e-09 4hnw:B, 6o07:B, 4xnh:B, 4xpd:B, 4y49:B, 4y49:H, 4y49:N
8 5c88:A 158 145 0.2179 0.2468 0.2690 1.33e-09 6ag4:A, 6ag5:A, 5c88:B, 4lx9:A, 4r3k:A, 4r3l:A, 2x7b:A
9 6ygb:A 159 123 0.1844 0.2075 0.2683 1.17e-05 6ygc:A, 6ygd:A
10 7l1k:A 149 138 0.1620 0.1946 0.2101 9.34e-05
11 4pv6:G 154 166 0.2291 0.2662 0.2470 1.01e-04 4pv6:C, 4pv6:I, 4pv6:F, 4pv6:A, 4pv6:H, 4pv6:J, 4pv6:E
12 2ob0:C 166 142 0.2123 0.2289 0.2676 0.002 2ob0:A, 2ob0:B, 6ppl:A, 2psw:A, 2psw:B, 2psw:C, 3tfy:A, 3tfy:B, 3tfy:C, 6wf3:A, 6wf3:B, 6wf3:C, 6wf3:D, 6wf3:E, 6wf3:F, 6wf5:A, 6wf5:B, 6wfg:A, 6wfg:C, 6wfg:E, 6wfk:A, 6wfk:B, 6wfk:C, 6wfn:A, 6wfo:A, 6wfo:B, 6wfo:C, 4x5k:A
13 7mx2:A 152 134 0.1899 0.2237 0.2537 0.002 7rb3:A
14 6z00:A 156 78 0.1229 0.1410 0.2821 0.16 6yzz:A, 6z00:B
15 3s6f:A 143 65 0.1117 0.1399 0.3077 0.25
16 6sjy:B 175 79 0.1341 0.1371 0.3038 0.37 6sjy:A, 6sjy:C, 6sk1:A, 6sl8:A, 6sll:A, 6sll:B
17 3pp9:A 176 128 0.1620 0.1648 0.2266 0.83 3pp9:B, 3pp9:C
18 1gl9:B 1020 121 0.1676 0.0294 0.2479 1.3 1gl9:C
19 2ge3:A 164 84 0.1061 0.1159 0.2262 1.6 2ge3:B, 2ge3:C
20 4it5:B 169 52 0.0894 0.0947 0.3077 6.1 4it5:A, 4it5:C, 4it5:D
21 5e9a:B 684 45 0.0782 0.0205 0.3111 7.0 5e9a:A, 5e9a:C, 5e9a:D, 5e9a:E, 5e9a:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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