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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TSHCRFYENKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGY
IDLSKRRVSSEDIIKCEEKYQKSKTVHSILRYCAEKFQIPLEELYKTIAWPLSRKFGHAYEAFKLSIIDETVWEGIEPPS
KDVLDELKNYISKRLTPAVKIRADVEVSCFSYEGIDAIKDALKSAEDMSTEQMQVKVKLVAAPLYVLTTQALDKQKGIEQ
LESAIEKITEVITKYGGVCNITMPPKA

The query sequence (length=267) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8rw1:j 267 267 1.0000 1.0000 1.0000 0.0 8cas:j, 6fyx:j, 6fyy:j, 6gsm:j, 6gsn:j, 3j81:j, 3jap:j, 8s8d:j, 8s8e:j, 8s8f:j, 8s8g:j, 8s8h:j, 8s8i:j, 8s8j:j
2 7a09:O 296 272 0.5618 0.5068 0.5515 6.79e-100 6fec:P, 5k0y:P, 1kl9:A, 8oz0:D, 8p03:A, 8p09:A, 8pj1:r, 8pj2:r, 8pj3:r, 8pj4:r, 8ppl:Ir, 7qp6:r, 7qp7:r, 7syr:j, 7sys:j, 6yal:A, 6yam:A, 6yan:A, 6ybv:r, 6zmw:r, 6zp4:O
3 7ase:s 295 274 0.3558 0.3220 0.3467 7.41e-47
4 5jb3:9 254 257 0.2285 0.2402 0.2374 2.67e-13 5jbh:9, 3qsy:B, 3v11:B
5 4nni:A 161 87 0.1086 0.1801 0.3333 1.67e-04 4nni:B
6 2cxx:A 184 51 0.0749 0.1087 0.3922 0.001 2cxx:B, 2cxx:C
7 5wtz:A 420 89 0.0974 0.0619 0.2921 1.1 5h04:A, 5wu0:A
8 7ogk:A 695 72 0.0712 0.0273 0.2639 2.5 3gcm:A, 3gcm:B, 3gcm:C, 3h1c:A, 3h1c:B, 3h1c:C, 3h1c:K, 3h1c:G, 3h1c:I, 3h1c:M, 3h1c:O, 3h1c:R, 3h1c:T, 3h1c:V, 3h1c:X, 7ogk:B, 7ogk:C, 7ogm:L, 7ogm:N, 7ogm:O
9 8gzh:C 1052 105 0.0936 0.0238 0.2381 2.8 8gzg:C
10 6mus:J 121 35 0.0524 0.1157 0.4000 2.8
11 6mur:B 162 58 0.0637 0.1049 0.2931 3.5 6mus:B, 6o7e:B, 6o7h:B, 6o7i:B
12 2cbz:A 230 28 0.0412 0.0478 0.3929 4.4
13 6bum:B 363 38 0.0449 0.0331 0.3158 4.6 6bum:A, 6bum:C, 6bum:D, 6bun:A, 6bun:B, 6bun:C, 6bun:D, 6buo:A, 6buo:D, 6buo:B, 6buo:C, 6bup:A, 6bup:B, 6bup:C, 6bup:D, 6buq:A, 6buq:D, 6buq:B, 6buq:C, 6bur:A, 6bur:B, 6bur:C, 6bur:D, 6cwj:A, 6cwj:B, 6cwj:C, 6cwj:D
14 8p0j:B 1155 42 0.0487 0.0113 0.3095 5.0 8p0k:B, 8p0n:B
15 7aoh:B 1134 42 0.0487 0.0115 0.3095 5.2 7amv:B, 7aof:B, 7aoz:B, 7ap8:B, 7ap9:B, 8c8h:B, 6rfl:B, 6ric:B, 6rid:B, 6rie:B
16 5frb:A 470 81 0.0824 0.0468 0.2716 5.9 6cr2:A, 6cr2:B, 4uyl:A, 4uyl:B, 4uym:A, 4uym:B
17 4mag:A 307 53 0.0562 0.0489 0.2830 6.1 7a5q:A, 7a5q:B
18 6nts:A 583 62 0.0599 0.0274 0.2581 7.9 6iur:F, 8twe:A
19 8h3m:C 930 71 0.0674 0.0194 0.2535 9.1
20 3edo:A 151 32 0.0487 0.0861 0.4062 9.2 3edo:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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