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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TSGVLLESQTKITDGALHFDGKKLNHNTFENPSKSQAYDYFFGRNISAHGDAVKPYKHFVFMTWYKGGKEERNVMLSRFN
TKTGVVKTIQFPHRHTGFRGDPLVGESHNTIGLAVSPLNGTIHMVYDMHAYVDDDETGRFKGRFVDDFFRYSFSVAGAAD
VPDDEFTLEQFVKDTSELSQGADDYKHLTMTGNLQDKENFSALTYPKFYTSDDGELLHYMRWGGNNNGAYYFNKYDAKNQ
KWTRFTPFNHKDQKTHGNAYNWGLYGQMKYINGKLRVGFQQNSANNDDRFKYQNGVYYAYSDHPDGLGNWKNVDGEDMTW
PLVNSDEIKIFEPGDYIDHTAPNSVHIVTGFDWTVTENDDVHFITHVRSTDTKRSDYKEVSIHAFKPANAVDFTITTDFT
GADSIYTSGDSIFIIGLKNGYPFVEKAKGGSNDFEVVYQQASGVKFDHGTIHIENGKAYYYLMEKGAGNALPLHLQVIDL
GV

The query sequence (length=482) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6jq9:B 483 482 0.9979 0.9959 0.9979 0.0 6byp:A, 6byp:B, 6byt:A, 6byt:B, 6byx:A, 6byx:B, 6jq9:A
2 7czh:A 481 485 0.5041 0.5052 0.5010 1.89e-158 7czh:B, 7drq:A, 7drq:B
3 7esn:A 435 229 0.1349 0.1494 0.2838 6.25e-08 7esk:A, 7esm:A, 8i4d:A, 7yqs:A
4 5mul:A 378 181 0.0975 0.1243 0.2597 4.06e-04
5 6npl:A 861 60 0.0415 0.0232 0.3333 0.65 6nph:A, 6nph:B, 6npl:B
6 5vpn:E 585 45 0.0373 0.0308 0.4000 2.2 6awf:A, 2b76:A, 2b76:M, 1kf6:A, 1kf6:M, 1kfy:A, 1kfy:M, 4kx6:A, 4kx6:M, 1l0v:A, 1l0v:M, 3p4p:A, 3p4p:M, 3p4q:A, 3p4q:M, 3p4r:A, 3p4r:M, 3p4s:A, 3p4s:M, 5vpn:A
7 7ook:C 373 110 0.0643 0.0831 0.2818 3.4 7ook:B, 7ook:A
8 6b58:C 544 42 0.0353 0.0312 0.4048 4.8 6b58:A
9 6awf:E 487 42 0.0353 0.0349 0.4048 5.2
10 3cir:A 541 42 0.0353 0.0314 0.4048 5.9
11 8isq:A 261 50 0.0311 0.0575 0.3000 8.2 8isp:A, 8isr:A, 8isr:B
12 5yle:A 331 104 0.0581 0.0846 0.2692 9.5 5gov:B, 5gov:A, 5grr:A, 5k4p:A, 6li4:A, 6li4:B, 6li6:A, 6li6:B, 5lrm:A, 5lrn:A, 5lrn:B, 7yjp:A, 7yjp:B, 7yjq:A, 7yjq:B, 7yjr:A, 7yjr:B, 7yjs:A, 7yjs:B, 7yjt:A, 7yjt:B, 5ylc:A, 5ylf:A, 5zjv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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