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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TSFSILMSPFVPSTIFPVVKWITYVGLGISIGSLILCLIIEALFWKQIKKSQTSHTRRICMVNIALSLLIADVWFIVGAT
VSGVCTAAVFFTHFFYLSLFFWMLMLGILLAYRIILVFHHMAQHLMMAVGFCLGYGCPLIISVITIAVTQPSNTYKRKDV
CWLNWSNGSKPLLAFVVPALAIVAVNFVVVLLVLTKLWRPTVGERLSRDDKATIIRVGKSLLILTPLLGLTWGFGIGTIV
DSQNLAWHVIFALLNAFQGFFILCFGILLDSKLRQLLFNK

The query sequence (length=280) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7wu4:R 286 286 1.0000 0.9790 0.9790 0.0 7wu3:R, 7wu5:R
2 8g2y:R 251 276 0.8964 1.0000 0.9094 6.27e-169
3 7xkd:R 261 266 0.2571 0.2759 0.2707 1.56e-12 7wui:R, 7xke:R, 7xkf:R
4 6pb0:R 281 269 0.2429 0.2420 0.2528 3.55e-11 8gtg:A, 8gti:A, 8gtm:A, 4k5y:C
5 6nbh:R 379 273 0.2607 0.1926 0.2674 1.99e-09 8flt:R, 8ha0:R, 8haf:R, 8jr9:R, 6nbf:R, 6nbi:R
6 6pb1:P 281 198 0.1714 0.1708 0.2424 5.06e-08
7 7vvo:R 302 249 0.2357 0.2185 0.2651 2.15e-07 8gw8:R
8 4z9g:A 421 178 0.1679 0.1116 0.2640 1.57e-06 4k5y:A, 4k5y:B, 4z9g:B, 4z9g:C
9 4z9g:A 421 110 0.1107 0.0736 0.2818 5.4 4k5y:A, 4k5y:B, 4z9g:B, 4z9g:C
10 7d76:R 265 263 0.2357 0.2491 0.2510 3.50e-06 7d77:R
11 8e3x:R 362 231 0.1786 0.1381 0.2165 2.83e-05 6m1i:A, 6p9y:R
12 7tyn:R 373 195 0.2036 0.1528 0.2923 1.14e-04 9auc:R, 8f0j:R, 8f0k:R, 8f2b:R, 6niy:R, 7tyf:R, 7tyo:R, 7tyw:R, 7tyx:R, 7tyy:R, 7tzf:R
13 8e3y:R 372 268 0.2179 0.1640 0.2276 7.16e-04 8e3z:R, 6vn7:R
14 6lpb:R 331 217 0.1607 0.1360 0.2074 0.007
15 7f16:R 376 186 0.1571 0.1170 0.2366 0.040
16 7knu:R 341 151 0.1607 0.1320 0.2980 0.17
17 7fin:R 380 152 0.1286 0.0947 0.2368 0.71 7dty:R, 7fiy:R, 7rbt:R, 7vab:R, 8yw4:R
18 8y52:R 299 104 0.0964 0.0903 0.2596 1.3 8y53:R
19 7psl:A 600 65 0.0786 0.0367 0.3385 2.8 4myh:B, 7psl:B, 7psm:A, 7psm:B, 7psn:A, 7psn:B
20 6fj3:A 562 58 0.0643 0.0320 0.3103 3.5 8d51:A, 8d52:A, 7uzo:A, 7uzp:A, 7uzp:C, 7uzp:E
21 6jko:A 376 47 0.0500 0.0372 0.2979 6.6 6jko:B, 6jko:C, 6jko:D, 6jkp:A, 6jkp:B, 6jkp:C, 6jkp:D
22 3lpp:B 869 31 0.0429 0.0138 0.3871 9.6 3lpp:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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