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BioLiP
>protein
TSDVPPAPAGFDFDAAKKLVDVRCNKCHTLDSVADLFRTKYKKTGQVNLIVKRMQGFPGSGISDDDAKTIGIWLHEKF

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3a9f:A 78 78 1.0000 1.0000 1.0000 1.88e-54 3a9f:B
2 1ccr:A 111 73 0.2692 0.1892 0.2877 0.019
3 1b7v:A 71 68 0.2179 0.2394 0.2500 0.031 1c75:A, 1k3g:A, 1k3h:A, 1n9c:A
4 1jmx:A 493 61 0.2564 0.0406 0.3279 0.58 1jmz:A
5 8ip8:HB 205 44 0.1795 0.0683 0.3182 0.84 8ipa:HB, 8ipb:HB, 8jiv:CI
6 2aiu:A 104 71 0.2436 0.1827 0.2676 1.8
7 8azw:g 209 39 0.1795 0.0670 0.3590 2.2 8b2l:g3, 7qiw:L, 7qiz:L
8 4v3p:LI 184 44 0.1795 0.0761 0.3182 2.6 4v7e:CI
9 2e9l:A 466 74 0.2564 0.0429 0.2703 2.7 2e9m:A, 3vkk:A, 2zox:A
10 3rss:A 494 37 0.1410 0.0223 0.2973 2.8 2ax3:A, 3rrb:A, 3rre:A, 3rrf:A, 3rrj:A, 3rs8:A, 3rs9:A, 3rsf:A, 3rsg:A, 3rsq:A, 3rt7:A, 3rt9:A, 3rta:A, 3rtb:A, 3rtc:A, 3rtd:A, 3rte:A, 3rtg:A, 3ru2:A, 3ru3:A
11 3j3v:T 95 29 0.1538 0.1263 0.4138 4.2 7aqc:h, 7aqd:h, 7as8:X, 7as9:X, 8buu:T, 6ha1:T, 6ha8:T, 6htq:T, 3j3w:T, 3j9w:BW, 5njt:m, 7o5b:s, 7ope:X, 6ppf:T, 6ppk:T, 6pvk:T, 8qcq:T, 7qgu:T, 7qh4:T, 8qpp:s, 7qv1:T, 7qv2:T, 7qv3:T, 8r55:s, 8s1p:T, 8s1u:T, 7s9u:T, 7sae:T, 6tnn:m, 6tpq:m
12 3cxh:W 112 26 0.1410 0.0982 0.4231 4.9 1yea:A, 1yeb:A, 1ytc:A
13 1gv3:A 213 27 0.1282 0.0469 0.3704 5.9 1gv3:B
14 5u92:A 347 19 0.1154 0.0259 0.4737 6.7
15 8eug:I 170 39 0.1667 0.0765 0.3333 6.7 8eui:I
16 351c:A 82 67 0.2179 0.2073 0.2537 6.8 451c:A, 1dvv:A, 2exv:A, 2exv:C, 2pac:A, 3x39:A, 3x39:B
17 5jxf:A 694 19 0.1154 0.0130 0.4737 7.1 5jxf:B
18 6kms:C 210 38 0.1795 0.0667 0.3684 8.2 8cnc:A, 6h1d:A, 6h1e:A, 6k0x:A, 6khs:A, 6kmr:B, 6kms:D, 6ped:A, 8qdg:A, 8qdi:A
19 3wir:A 756 23 0.1282 0.0132 0.4348 8.2 3wiq:A, 3wir:B, 3wir:C, 3wir:D
20 5dfs:A 104 20 0.0769 0.0577 0.3000 8.2 5dfs:B, 6duj:A, 6duj:C, 6ecj:A, 6ecj:B, 6ecj:C, 6ecj:D, 6ecj:E, 6ecj:F, 6ecj:G, 6ecj:H, 5exq:A, 5exq:B, 1j3s:A, 2n3y:A, 2n9i:A, 2n9j:A, 3nwv:A, 3nwv:B, 3nwv:C, 3nwv:D, 5o10:A, 5o10:B, 5ty3:A, 5ty3:B, 6xnk:A, 6xnk:C, 6xnk:E, 6xnk:G, 3zcf:A, 3zcf:B, 3zcf:C, 3zcf:D, 3zoo:A, 3zoo:B, 3zoo:C, 3zoo:D
21 1yiq:A 684 36 0.1538 0.0175 0.3333 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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