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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TSDLIPAPPLSKVPLQQNFQDNQFHGKWYVVGLAGNEVLREDKDPMKMWATIYELEEDKSYNVTIVMPLAEKCEYLFQTF
VPGSQPGEFTLGGIKSGPGRTSGLVRVVSTNYNQHAMVFFKVVWQNREVFWVTLYGRTKELTSELKENFIRFSKSLGLPE
NHIVFPVPIDQCIDG

The query sequence (length=175) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4qae:B 175 175 1.0000 1.0000 1.0000 2.02e-131 4qae:A, 4qae:C, 4qae:D, 4qae:F, 4qae:E
2 6z2c:A 178 175 0.8629 0.8483 0.8629 4.12e-108 6z2c:B, 6z2c:C
3 6qmu:A 184 174 0.8514 0.8098 0.8563 2.54e-107 3by0:A, 3by0:B, 3by0:C, 3cbc:A, 3cbc:B, 3cbc:C, 3cmp:A, 3cmp:B, 3cmp:C, 1dfv:A, 1dfv:B, 3fw4:A, 3fw4:C, 3fw5:A, 3fw5:B, 3fw5:C, 3hwe:A, 3hwe:B, 3hwe:C, 3hwf:A, 3hwf:B, 3hwf:C, 3hwg:A, 3hwg:B, 3hwg:C, 3i0a:A, 3i0a:B, 3i0a:C, 4k19:A, 4k19:B, 4k19:C, 3k3l:A, 3k3l:C, 5khp:A, 5khp:B, 5khp:C, 5kic:A, 5kic:B, 5kic:C, 5kid:A, 5kid:B, 5kid:C, 1l6m:A, 1l6m:B, 1l6m:C, 4mvi:A, 4mvk:A, 4mvl:A, 4mvl:B, 4mvl:C, 4mvl:D, 3pec:C, 3ped:A, 3ped:B, 3ped:C, 6qmu:B, 3t1d:A, 3t1d:B, 3t1d:C, 3tf6:A, 3tf6:B, 3tf6:C, 3tzs:A, 3tzs:B, 3tzs:C, 3u0d:A, 3u0d:B, 3u0d:C, 3u0d:D, 8uyn:A, 8uyn:B, 8uyn:C, 8uz9:A, 8uz9:B, 8uz9:C, 1x71:A, 1x71:B, 1x71:C, 1x89:A, 1x89:B, 1x89:C, 1x8u:A, 1x8u:B, 1x8u:C, 4zfx:A, 4zfx:C, 4zhc:A, 4zhc:B, 4zhc:C, 4zhd:A, 4zhd:B, 4zhd:C, 4zhf:A, 4zhf:B, 4zhf:C, 4zhf:D, 4zhf:E, 4zhf:F, 4zhg:A, 4zhg:B, 4zhg:C, 4zhg:D, 4zhg:E, 4zhg:F, 4zhh:A, 4zhh:B, 4zhh:C, 4zhh:D, 4zhh:E, 4zhh:F
4 6gr0:A 173 173 0.8457 0.8555 0.8555 6.00e-105 6gr0:B, 6gr0:C
5 5nkn:A 172 172 0.8286 0.8430 0.8430 2.81e-104 6z6z:A
6 4iaw:A 180 175 0.8171 0.7944 0.8171 6.01e-102 3dsz:A, 3dsz:B, 4iaw:B, 4iaw:C, 4iax:A
7 2ktd:A 167 161 0.3200 0.3353 0.3478 1.25e-21
8 4imo:A 155 155 0.2914 0.3290 0.3290 1.37e-18
9 8aej:A 160 157 0.2057 0.2250 0.2293 4.51e-10
10 2a2g:A 158 153 0.2057 0.2278 0.2353 7.44e-09 2a2g:B, 2a2g:C, 2a2g:D
11 2kt4:B 157 123 0.2229 0.2484 0.3171 4.81e-08 2lbv:A
12 3sao:A 150 126 0.2171 0.2533 0.3016 6.28e-06 3sao:B
13 3kff:A 152 154 0.1829 0.2105 0.2078 2.13e-04 3kfg:A, 3kfh:A, 3kfi:A
14 2qos:C 173 159 0.1886 0.1908 0.2075 8.20e-04 2ovd:A
15 2dm5:A 157 161 0.2114 0.2357 0.2298 0.004 1i05:A, 1jv4:A, 2nnd:A, 1qy1:A, 1qy2:A, 1yp6:A, 1znd:A, 1zne:A, 1zng:A, 1znh:A, 1znl:A
16 1gm6:A 158 156 0.1600 0.1772 0.1795 0.005
17 7w6x:A 447 75 0.1200 0.0470 0.2800 0.12
18 1lnm:A 160 143 0.2057 0.2250 0.2517 0.46 1lke:A
19 4ubf:A 309 83 0.1257 0.0712 0.2651 1.3
20 4zpl:A 316 53 0.0914 0.0506 0.3019 2.3
21 4lrl:C 455 84 0.1200 0.0462 0.2500 2.7 3irh:A, 3irh:B, 3irh:C, 3irh:D, 4lrl:A, 4lrl:B, 4lrl:D, 2o6i:A, 2o6i:B
22 3k30:A 684 46 0.0857 0.0219 0.3261 5.3 3k30:B
23 4dq5:A 164 37 0.0571 0.0610 0.2703 5.5 4dq5:B, 4dqj:A
24 1iiu:A 174 179 0.2057 0.2069 0.2011 5.5
25 5hqm:A 459 87 0.1143 0.0436 0.2299 7.2 5han:A, 5han:B, 5han:C, 5han:D, 5han:E, 5han:F, 5han:G, 5han:H, 5han:I, 5han:J, 5han:K, 5han:L, 5hao:A, 5hao:B, 5hao:C, 5hao:D, 5hao:E, 5hao:F, 5hat:A, 5hat:B, 5hat:C, 5hat:D, 5hat:E, 5hat:F, 5hat:G, 5hat:H, 5hat:I, 5hat:J, 5hat:K, 5hat:L, 5hjx:A, 5hjx:B, 5hjx:C, 5hjx:D, 5hjx:E, 5hjx:F, 5hjy:A, 5hjy:B, 5hjy:C, 5hjy:D, 5hjy:E, 5hjy:F, 5hk4:A, 5hk4:B, 5hk4:C, 5hk4:D, 5hk4:E, 5hk4:F, 5hql:A, 5hql:B, 5hql:C, 5hql:D, 5hql:E, 5hql:F, 5hqm:B, 5koz:A, 5koz:B, 5koz:C, 5koz:D, 5koz:E, 5koz:F, 5koz:G, 5koz:H, 5koz:I, 5koz:J, 5koz:K, 5koz:L, 4lf1:A, 4lf1:B, 4lf1:C, 4lf1:D, 4lf1:E, 4lf1:F, 4lf2:A, 4lf2:C, 4lf2:D
26 1dzm:A 149 92 0.1257 0.1477 0.2391 8.8 1dzj:A, 1dzj:B, 1dzk:A, 1dzm:B, 1dzp:A, 1dzp:B, 1e00:A, 1e00:B, 1e02:A, 1e02:B, 1e06:A, 1e06:B, 1hqp:A
27 2hzq:A 166 18 0.0457 0.0482 0.4444 9.1
28 2ra6:C 143 60 0.0857 0.1049 0.2500 9.3 2r74:A, 2r74:B, 2ra6:A, 2ra6:B, 2ra6:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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