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BioLiP
>protein
TSDIKLLDYLRVRRSTPALQLSEPGPSKGEIEEILRLAVRVPDHGKLAPWRFVVYRGEERVRLSEAALRIALEKNPDLDL
QQQEAERTRFTRAPVVIAVISTAKPHFKIPEWEQVMSAGAVCLNVIFAANASGFAANWLTEWLAFDPAFLAEIGVSAEEK
VAGYIHIGSTTFPPVERPRPELADVVTWVGD

The query sequence (length=191) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3k6h:A 191 191 1.0000 1.0000 1.0000 2.85e-139 3k6h:B
2 7tmf:B 183 163 0.3141 0.3279 0.3681 2.01e-28 7tmf:A, 7tmg:A, 7tmg:B
3 3bm1:A 177 174 0.3141 0.3390 0.3448 3.10e-27 3bm1:B
4 8dil:A 175 169 0.3037 0.3314 0.3432 4.48e-25 8dil:B, 8dil:C, 8dil:D, 8dil:E, 8dil:F
5 2i7h:A 187 184 0.2408 0.2460 0.2500 1.52e-09 2i7h:B, 2i7h:C, 2i7h:D
6 3gfa:A 197 184 0.2356 0.2284 0.2446 8.39e-07 3gfa:B
7 3ek3:A 187 173 0.2251 0.2299 0.2486 3.59e-04
8 3qdl:A 178 180 0.2094 0.2247 0.2222 0.019 3qdl:B, 3qdl:C, 3qdl:D
9 4eo3:A 321 200 0.2565 0.1526 0.2450 0.12 4eo3:B
10 3e10:B 167 107 0.1466 0.1677 0.2617 0.13 3e10:A
11 2b67:A 201 172 0.2094 0.1990 0.2326 0.37 2b67:B, 2b67:C, 2b67:D
12 3gr3:A 226 28 0.0681 0.0575 0.4643 0.53 3gr3:B
13 3ge6:A 210 33 0.0733 0.0667 0.4242 0.60 3ge6:B
14 7ok0:A 880 88 0.1257 0.0273 0.2727 0.69 7oq4:A, 7oqy:A
15 3ge5:A 176 155 0.1885 0.2045 0.2323 0.85 3ge5:B
16 1nox:A 200 42 0.0995 0.0950 0.4524 1.2
17 7cp7:A 430 49 0.0995 0.0442 0.3878 1.3 7cp6:A, 7cp6:B
18 8amd:A 333 65 0.1099 0.0631 0.3231 1.3 8amd:B, 8amd:F, 8amd:G, 8amf:A, 8amf:B, 8amf:F, 8amf:G
19 3kwk:A 168 118 0.1466 0.1667 0.2373 1.6
20 3e39:A 175 137 0.1728 0.1886 0.2409 4.9 3e39:B
21 3gbh:B 213 50 0.0733 0.0657 0.2800 5.2 3gbh:A, 3gbh:C, 3gbh:D
22 2ekp:A 238 120 0.1623 0.1303 0.2583 5.5
23 7dp0:A 223 197 0.2304 0.1973 0.2234 5.8 7dp0:B, 7dp1:A, 7dp1:B, 7dp2:A, 7dp2:B
24 8ouw:6 707 56 0.0838 0.0226 0.2857 9.1
25 8dos:A 247 41 0.0942 0.0729 0.4390 9.3 8dos:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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