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BioLiP
>protein
TSARDLLREMARDKPRLLAALEVASAAMAKEEAAGGEQDALDLYQHSLGELLLLLAAEPPGRRRELLHTEVQNLMARAEY
LKEQVKM

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4wzx:A 87 87 1.0000 1.0000 1.0000 4.79e-56
2 4u7y:A 83 78 0.3103 0.3253 0.3462 6.87e-07 2jqk:A
3 2c6x:A 363 42 0.2069 0.0496 0.4286 4.3 2c6x:B, 2c6x:C, 2c6x:D
4 7b1f:A 122 35 0.1264 0.0902 0.3143 5.4 7b1f:B, 7b1h:B, 7b1h:A, 7b1h:E, 7b1h:F, 7b1j:B, 7b1j:A
5 3oaj:A 310 42 0.1609 0.0452 0.3333 6.9 3oaj:B
6 7r81:S1 182 25 0.1379 0.0659 0.4800 7.6
7 1nrj:B 191 24 0.0920 0.0419 0.3333 9.6
8 1uaa:A 636 59 0.1839 0.0252 0.2712 9.8 1uaa:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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