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BioLiP
>protein
TRYYCEYCHSYLTHDTLSVRKSHLVGKNHLRITADYYRNKARDIINKHNHKRRHIGKRGRKERENSSQNETLKVTCLSNK
EKRHIMHVKKMNQKELAQTSIDTLKLLYDGSPGYSKVFVDANRFDIGDLVKASKLPQRANSRSRDETCESNPFPRLNNPK
KLEPPKILSQWSNTIPKTSIFYSV

The query sequence (length=184) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6n7p:B 195 194 0.9946 0.9385 0.9433 2.30e-134 6g90:C, 6n7r:B, 6n7x:B, 7oqc:C, 7oqe:C, 5zwn:R
2 8w2o:B 178 183 0.8533 0.8820 0.8579 7.84e-115
3 2vrd:A 61 50 0.1196 0.3607 0.4400 5.73e-09 4pjo:L, 4pjo:l, 4pjo:M, 4pjo:m, 6qx9:1C, 7vpx:N
4 8y6o:V 101 51 0.0978 0.1782 0.3529 0.008
5 5d2r:A 420 104 0.1685 0.0738 0.2981 1.4 4q6m:A, 4q6n:A, 4q6o:A, 4q6p:A, 4q6q:A, 4wck:A, 4wcl:A, 4wcm:A, 4wcn:A
6 3vm5:A 499 33 0.0761 0.0281 0.4242 4.2
7 7dvq:v 119 29 0.0598 0.0924 0.3793 4.8 8y7e:v
8 6g90:T 462 26 0.0707 0.0281 0.5000 6.0 7dco:u, 4dgw:A, 5nrl:T, 5zwm:u
9 6hiv:A9 53 16 0.0543 0.1887 0.6250 6.1 6hix:A9
10 6bwd:A 771 74 0.1359 0.0324 0.3378 8.1 6bwd:B, 6bwd:D, 6bwd:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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