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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TRYLRLKAPFAAFRPFQSGSFRSTTPVPSFSAVYGLLLNLAGIEQRQEVEGKVTLIKPKAELPKLAIAIGQVKPSSTSLI
NQQLHNYPVGNSGKEFASRTFGSKYWIAPVRREVLVNLDLIIGLQSPVEFWQKLDQGLKGENFLFDEIYPIEKPDLASWY
CPLEPDTRPNQGACRLTLWIDRENNTQTTIKVFSPSDFRLEPPAKAWQQLPG

The query sequence (length=212) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ip0:A 212 212 1.0000 1.0000 1.0000 3.25e-157 8h67:A, 8h7q:A
2 8fcj:A 212 233 0.2594 0.2594 0.2361 2.56e-04 8fcu:A, 8fd2:A, 8fd3:A, 8ff4:A, 8ff5:A
3 4f32:B 423 40 0.0708 0.0355 0.3750 2.3 4f32:A
4 8xq7:A 1041 40 0.0566 0.0115 0.3000 3.0 8xq7:B
5 3ujj:H 230 113 0.1132 0.1043 0.2124 4.2 6vbo:H
6 2y6s:C 217 62 0.0849 0.0829 0.2903 5.1 5eoc:L, 5eoc:M, 2gsi:C, 2gsi:G, 2gsi:A, 2gsi:E, 3pho:A, 2y6s:L
7 4hha:B 226 67 0.0849 0.0796 0.2687 6.5
8 5wnb:H 226 66 0.0755 0.0708 0.2424 9.3 5wnb:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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