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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TRWTPTTEQIKILKELYYNNAIRSPTADQIQKITARLRQFGKIEGKNVFYWFQNHKARE

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ryd:A 69 59 1.0000 0.8551 1.0000 1.18e-39 6ryd:B, 6ryd:E, 6ryd:F, 6ryi:A, 6ryi:B, 6ryi:C, 6ryi:D, 6ryi:E, 6ryl:A, 6ryl:B, 6ryl:C, 6ryl:D, 6ryl:E
2 6wig:A 84 59 0.6949 0.4881 0.6949 2.25e-26 6wig:B
3 3q9t:A 577 41 0.2034 0.0208 0.2927 0.99 3q9t:B, 3q9t:C, 5zu2:A, 5zu2:B, 5zu2:C, 5zu3:A, 5zu3:B, 5zu3:C
4 8isk:B 848 19 0.1356 0.0094 0.4211 1.1 8isk:A
5 6ayo:A 229 39 0.2034 0.0524 0.3077 1.6 6ayo:B, 6ayq:A, 6ayq:B, 6ayr:A, 6ayr:B, 6ayr:C, 6ayr:D, 6ays:A, 6ays:B, 6ays:C, 6ays:G, 6ays:D, 6ays:H, 6ays:E, 6ays:F, 6ayt:A, 6ayt:B, 6ayt:C, 6ayt:D
6 5hod:A 61 58 0.3051 0.2951 0.3103 2.5 5hod:D
7 3kpt:B 355 21 0.1525 0.0254 0.4286 4.1
8 5inj:A 355 26 0.1525 0.0254 0.3462 4.8 5k9m:A
9 7w8w:A 346 26 0.1525 0.0260 0.3462 5.2 7w8v:A, 7w8x:A, 7w8y:A
10 2oo0:A 419 22 0.1525 0.0215 0.4091 6.5 5bwa:A, 7odc:A, 2on3:A, 2on3:B, 2oo0:B, 7s3f:A, 7s3f:B, 7s3g:A, 7s3g:B, 7u6p:A, 7u6p:B, 7u6u:A, 7u6u:B, 4zgy:A
11 8iff:A 868 18 0.1186 0.0081 0.3889 6.6 8f5z:B, 8f5z:A, 8iff:B, 8isj:A, 8isj:B
12 1xkq:A 272 44 0.3051 0.0662 0.4091 6.6 1xkq:B, 1xkq:C, 1xkq:D
13 6mat:A 578 38 0.2373 0.0242 0.3684 7.4 6mat:C, 6mat:E, 6mat:B, 6mat:D, 6mat:F, 7swl:A, 7swl:B, 7swl:C, 7swl:D, 7t0v:A, 7t0v:B, 7t0v:C, 7t0v:D, 7t0v:E, 7t0v:F, 7t3i:A, 7t3i:B, 7t3i:C, 7t3i:E, 7t3i:D
14 8ibd:AB 418 49 0.2373 0.0335 0.2857 8.5 8iao:Ab, 8iar:Ab, 8ibd:Ab, 8ibg:AB, 8ibg:Ab
15 3oth:A 395 33 0.1695 0.0253 0.3030 9.6 3otg:A, 3oth:B
16 6tl4:A 496 17 0.1186 0.0141 0.4118 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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