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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TRVFKKSSPNGKLTVYLGKRDFVDHLDKVDPVDGVVLVDPDYLKDRKVFVTLTVAFRYGREDCDVLGLSFRKDLFIANYQ
AFPPTPNPPRPPTRLQERLLRKLGQHAHPFFFTIPQNLPSSVTLQPGPEDTGKALGVDFEIRAFVAKSLEEKSHKRNSVR
LVIRKVQFAPEKPGPQPSAETTRHFLMSDRSLHLEASLDKELYYHGEPLNVNVHVTNNSTKTVKKIKVSVRQYADIVLFS
TAQYKVPVAQVEQDDQVSPSSTFSKVYTITPFLANNREKRGLALDGKLKHEDTNLASSTIVKEGANKEVLGILVSYRVKV
KLVVSRGGDVSVELPFVLMHPKPH

The query sequence (length=344) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8j8v:A 365 344 1.0000 0.9425 1.0000 0.0 8go9:A, 8go9:F, 8goc:A, 8goc:B, 8goc:C, 8goo:A, 8goo:B, 8goo:C, 8i0z:A, 8i0z:B, 8i0z:C, 8i10:A, 8i10:B, 8i10:C, 8j8r:A, 8j8r:B, 8j8r:C, 8j8v:F, 6k3f:A, 6k3f:B, 6k3f:C, 6k3f:D, 6k3f:E, 6k3f:F, 5tv1:A
2 7dfa:A 363 351 0.8023 0.7603 0.7863 0.0 8as2:A, 8as3:A, 7df9:A, 7dfb:A, 7dfc:A, 8go8:A, 8go8:B, 8gp3:A, 8gp3:B, 8hsv:A, 8hsv:B, 8i0n:B, 8i0n:A, 8i0q:B, 8i0q:A, 8j8z:A, 8j8z:B, 4jqi:A, 8jrv:A, 6ni2:B, 7r0j:C, 6up7:B, 8wrz:A, 1zsh:A
3 8jaf:A 320 343 0.7326 0.7875 0.7347 3.40e-176 8j97:A, 8ja3:B, 8ja3:A
4 7mp1:A 370 351 0.5727 0.5324 0.5613 2.96e-139 7f1w:A, 7f1w:B, 7f1w:D, 7f1x:A, 7f1x:B, 7f1x:C, 7f1x:D, 7jtb:B, 7jtb:C, 7jtb:D, 7jxa:A, 7jxa:B, 7jxa:C, 7jxa:D, 7mor:A, 7mor:B, 7mor:C, 7mor:D, 7mp0:A, 7mp0:D, 7mp0:B, 7mp0:C, 7mp1:B, 7mp1:C, 7mp1:D, 7mp2:A, 7mp2:B, 7mp2:C, 7mp2:D, 3ugx:A, 3ugx:B, 3ugx:C
5 7thq:B 505 42 0.0407 0.0277 0.3333 1.8 6o6e:B, 7thq:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218