Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA
KT

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4pkd:B 240 84 0.9756 0.3333 0.9524 3.83e-52 1aud:A, 7b0y:c, 3bo2:A, 3bo3:A, 3bo4:A, 4c4w:A, 4c4w:E, 3cul:A, 3cul:B, 3cun:A, 3cun:B, 7d7v:C, 5ddo:G, 5ddo:C, 5ddp:D, 5ddp:C, 5ddq:D, 5ddq:C, 5ddr:D, 5ddr:C, 7dlz:A, 7dlz:B, 1drz:A, 7dwh:A, 7dwh:B, 1dz5:A, 1dz5:B, 3egz:A, 5fj4:A, 5fj4:E, 3g8s:A, 3g8s:B, 3g8s:C, 3g8s:D, 3g8t:A, 3g8t:B, 3g8t:C, 3g8t:D, 3g96:A, 3g96:B, 3g96:C, 3g96:D, 3g9c:A, 3g9c:B, 3g9c:C, 3g9c:D, 8gxb:C, 8gxb:D, 8gxb:F, 8gxc:C, 8gxc:D, 8gxc:F, 3hhn:B, 3hhn:D, 3iin:A, 3irw:P, 3iwn:C, 3iwn:D, 8jy0:A, 8jy0:C, 8jy0:E, 3k0j:A, 3k0j:B, 3l3c:A, 3l3c:B, 3l3c:C, 3l3c:D, 6las:E, 6las:D, 6las:C, 6lau:E, 6lau:D, 6lau:C, 6lax:D, 6lax:E, 6lax:C, 6laz:D, 6laz:E, 6laz:C, 1m5k:C, 1m5k:F, 1m5o:C, 1m5o:F, 1m5p:C, 1m5p:F, 1m5v:C, 1m5v:F, 3mum:P, 3mur:P, 3mut:P, 3muv:P, 3mxh:P, 2nz4:A, 2nz4:B, 2nz4:C, 2nz4:D, 2oih:A, 2oj3:A, 3p49:B, 4pr6:A, 4prf:A, 7qr3:A, 7qr3:B, 7qr4:A, 6qx9:1A, 3r1h:A, 3r1h:D, 3r1l:A, 3r1l:D, 1sj3:P, 1sj4:P, 1sjf:A, 6sqn:A, 6sqn:B, 6sqn:C, 6sqq:AAA, 6sqq:BBB, 6sqq:CCC, 1u6b:A, 3ucu:P, 3ucz:P, 3ud3:P, 3ud4:P, 1urn:A, 1urn:B, 1urn:C, 1vbx:A, 1vby:A, 1vbz:A, 1vc0:A, 1vc5:A, 1vc6:A, 7vpx:M, 4w90:B, 4w92:B, 1zzn:A
2 6xh2:A 93 84 0.9390 0.8280 0.9167 1.38e-51 6cmn:A, 3k0j:D, 3k0j:C, 6xh0:A, 6xh1:A, 6xh3:A
3 7abg:B 169 83 0.7317 0.3550 0.7229 4.37e-41 7a5p:X, 1a9n:B, 1a9n:D, 7abi:B, 6ah0:p, 6ahd:p, 8c6j:Y, 8ch6:s, 7evo:G, 9fmd:p, 8h6e:2C, 8h6j:2C, 8h6k:2C, 8h6l:2C, 8hk1:G, 8i0p:p, 8i0r:p, 8i0s:p, 8i0t:p, 8i0u:p, 8i0v:p, 8i0w:p, 6icz:p, 6id0:p, 6id1:p, 5mqf:X, 6qdv:Y, 8qo9:2B, 6qx9:2B, 8qxd:2B, 8qzs:2B, 8r08:2B, 8r09:2B, 8r0a:2B, 8r0b:2B, 8rm5:2B, 7vpx:G, 7w59:p, 7w5a:p, 7w5b:p, 5xjc:p, 6y53:b, 6y5q:b, 5yzg:p, 5z56:p, 5z57:p, 5z58:p
4 7abg:B 169 80 0.2927 0.1420 0.3000 0.015 7a5p:X, 1a9n:B, 1a9n:D, 7abi:B, 6ah0:p, 6ahd:p, 8c6j:Y, 8ch6:s, 7evo:G, 9fmd:p, 8h6e:2C, 8h6j:2C, 8h6k:2C, 8h6l:2C, 8hk1:G, 8i0p:p, 8i0r:p, 8i0s:p, 8i0t:p, 8i0u:p, 8i0v:p, 8i0w:p, 6icz:p, 6id0:p, 6id1:p, 5mqf:X, 6qdv:Y, 8qo9:2B, 6qx9:2B, 8qxd:2B, 8qzs:2B, 8r08:2B, 8r09:2B, 8r0a:2B, 8r0b:2B, 8rm5:2B, 7vpx:G, 7w59:p, 7w5a:p, 7w5b:p, 5xjc:p, 6y53:b, 6y5q:b, 5yzg:p, 5z56:p, 5z57:p, 5z58:p
5 8ro1:p 76 76 0.6341 0.6842 0.6842 1.95e-36
6 6f4h:C 96 82 0.7683 0.6562 0.7683 3.28e-35 6f4g:B, 6f4g:E, 6f4h:A, 6f4h:E
7 3jb9:k 89 79 0.4146 0.3820 0.4304 1.52e-20
8 7b9v:Y 88 83 0.3293 0.3068 0.3253 3.78e-14 6bk8:r, 7dco:p, 6exn:Y, 6g90:Y, 5gmk:a, 6j6g:a, 6j6h:a, 6j6n:a, 6j6q:a, 5lj3:Y, 5lj5:Y, 5mq0:Y, 5nrl:Y, 7oqb:Y, 7oqe:Y, 5wsg:X, 5y88:p, 5ylz:p, 5zwm:p, 5zwo:p
9 2mb0:B 95 84 0.3049 0.2632 0.2976 1.80e-07
10 3lqv:B 115 67 0.2805 0.2000 0.3433 8.08e-07 2f9j:B, 3lqv:A, 7q4o:F, 8qo9:B6, 8qxd:B6, 8qzs:B6, 8r08:B6, 8r09:B6, 8r0a:B6, 8r0b:B6, 8rm5:B6
11 2fy1:A 108 79 0.2805 0.2130 0.2911 4.73e-06
12 2leb:A 101 81 0.2561 0.2079 0.2593 6.30e-06 2lec:A
13 7zew:A 117 80 0.3049 0.2137 0.3125 1.73e-05 7zex:A
14 7q33:A 93 79 0.2805 0.2473 0.2911 2.01e-05 6pai:D, 6q0r:D, 6q0v:D, 6q0w:D, 6sj7:C, 6ud7:C, 6ue5:C
15 7qde:B 169 63 0.2439 0.1183 0.3175 3.42e-05 7qdd:B
16 6hpj:B 84 75 0.2561 0.2500 0.2800 1.02e-04
17 7s7b:C 79 80 0.2439 0.2532 0.2500 1.12e-04 7s7b:G, 7s7c:C
18 6dg0:B 84 78 0.2927 0.2857 0.3077 1.35e-04 6dg0:A
19 5mqf:o 223 80 0.2927 0.1076 0.3000 1.47e-04 6id1:y, 7w59:y, 7w5a:y, 7w5b:y
20 8y6o:W 167 71 0.2683 0.1317 0.3099 1.74e-04
21 2rra:A 99 66 0.2439 0.2020 0.3030 1.84e-04 2kxn:B
22 8xxm:3G 84 83 0.2683 0.2619 0.2651 5.54e-04 5k0y:O, 8pj1:o, 8pj2:o, 8pj3:o, 8pj4:o, 8pj5:o, 8pj6:o
23 4ed5:B 169 66 0.2683 0.1302 0.3333 6.16e-04 4ed5:A
24 4bs2:A 174 48 0.1585 0.0747 0.2708 0.002 4iuf:A, 4y00:A, 4y00:B, 4y00:C, 4y00:D, 4y0f:A, 4y0f:B
25 8i0v:4 161 82 0.3049 0.1553 0.3049 0.002
26 8i0v:4 161 80 0.2561 0.1304 0.2625 0.036
27 4f02:A 175 81 0.3049 0.1429 0.3086 0.004 1cvj:A, 1cvj:B, 1cvj:C, 1cvj:D, 1cvj:E, 1cvj:F, 1cvj:G, 1cvj:H, 4f02:D
28 8h6e:4R 106 77 0.2805 0.2170 0.2987 0.007 8h6j:4R, 8qp8:R, 8qp9:R, 8qpk:R, 6qw6:R, 6qx9:R, 8qxd:R, 8r08:R, 8r0a:R
29 4lmz:A 176 84 0.2683 0.1250 0.2619 0.008 3nmr:A, 3nna:A, 3nnc:A, 3nnh:A, 3nnh:C, 3nnh:B, 3nnh:D
30 7csz:A 175 66 0.2927 0.1371 0.3636 0.008
31 4a8x:A 88 67 0.2561 0.2386 0.3134 0.008
32 3d2w:A 72 48 0.1341 0.1528 0.2292 0.010
33 2adb:A 127 60 0.2439 0.1575 0.3333 0.010 3zzy:A, 3zzy:B, 3zzz:A, 3zzz:B
34 6g90:B 193 70 0.2561 0.1088 0.3000 0.022
35 2n82:B 104 47 0.1829 0.1442 0.3191 0.030 2err:A, 7vrl:B
36 6n7p:A 186 70 0.2561 0.1129 0.3000 0.036 6n7r:A, 6n7x:A, 7oqc:B, 7oqe:B, 8w2o:A, 5zwn:Q
37 2mgz:B 105 46 0.1951 0.1524 0.3478 0.048 4ch1:A, 4cio:A, 2ru3:A
38 2yka:A 124 76 0.2561 0.1694 0.2763 0.054
39 2mxy:A 105 77 0.2805 0.2190 0.2987 0.078 2mz1:A
40 4qqb:A 169 71 0.2073 0.1006 0.2394 0.15 1b7f:A, 1b7f:B, 4qqb:B
41 8xxn:3B 536 53 0.1707 0.0261 0.2642 0.21 6zon:B, 6zp4:B, 6zvj:B
42 8pj1:1 588 53 0.1707 0.0238 0.2642 0.28 6fec:w, 2krb:A, 8oz0:I, 8pj2:1, 8pj3:1, 8pj5:1, 8pj6:1
43 7evo:D 200 52 0.1951 0.0800 0.3077 0.39 8hk1:D, 6n3e:A, 6n3f:C, 6nsx:A
44 8esq:o 137 62 0.1951 0.1168 0.2581 0.82 8esr:o, 8etg:o, 8eth:o, 8eti:o, 8eup:o, 8euy:o, 8ev3:o
45 1gud:A 288 18 0.1341 0.0382 0.6111 3.0 1rpj:A, 8wl7:A, 8wl9:A, 8wlb:A
46 6xyw:Aj 155 73 0.2439 0.1290 0.2740 3.1
47 3cei:A 213 29 0.1585 0.0610 0.4483 3.6 3cei:B
48 3tbg:A 467 82 0.2195 0.0385 0.2195 4.1 6csb:A, 6csb:B, 6csb:C, 6csb:D, 6csd:A, 6csd:B, 2f9q:A, 2f9q:B, 2f9q:C, 2f9q:D, 3qm4:A, 3qm4:B, 3tbg:C, 3tbg:B, 3tbg:D, 3tda:A, 3tda:C, 3tda:B, 3tda:D, 5tft:A, 5tft:B, 5tft:C, 5tft:D, 5tfu:A, 5tfu:B, 5tfu:C, 5tfu:D, 4wnt:A, 4wnt:B, 4wnu:A, 4wnu:C, 4wnu:B, 4wnu:D, 4wnv:A, 4wnv:C, 4wnv:B, 4wnv:D, 4wnw:A, 4wnw:B, 4xry:A, 4xry:B, 4xry:C, 4xry:D, 4xrz:A, 4xrz:B, 4xrz:C, 4xrz:D
49 3d34:B 215 22 0.1098 0.0419 0.4091 4.2 3d34:A
50 4dtf:A 356 25 0.1220 0.0281 0.4000 4.9 4dth:A, 4dtl:A, 4e1c:A, 4e1d:A, 4e1f:A, 4gqk:A
51 8hpc:C 303 26 0.1098 0.0297 0.3462 6.0 8hpc:A, 8hpc:B, 8hpc:D, 8hpc:E, 8hpc:F, 8hpc:G, 8hpc:H, 1uf5:A, 1uf5:B, 1uf7:A, 1uf7:B, 1uf8:A, 1uf8:B
52 4nhb:B 311 37 0.1463 0.0386 0.3243 6.1 4nhb:A
53 4koa:A 333 46 0.1341 0.0330 0.2391 8.5

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218