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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TRPGIVAGCLSPHPPHLIYGENPPQNEPRSTGGWETLRWAYERLRARIRDVHKPDVLIVHAPHWITMVGHHVNCVPNPRG
LSVEPIFPHLFRYRYDFRTDVELGEAIAEEASGLGLVTRTLRDPRVRVDYATIGALHLANPAWDIPVVSLSANNNPYFYS
DASLTEMEVLGEATRLAVEATGRRAVLLASNSLSHLHWHEEPELPEDMEREHPYNNHQYRWDMKLLEAIRRGPTAPLRDL
IPEHIEATASETKAGSLTWMLAAMGWPKVAGDVLGYGTIIGTGNAIVEWLPEG

The query sequence (length=293) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7txy:F 293 293 1.0000 1.0000 1.0000 0.0 7txy:B, 7txy:D, 7txy:H
2 3vsh:D 304 286 0.5700 0.5493 0.5839 2.36e-127 3vsh:B, 3vsi:B, 3vsi:D, 3vsj:B, 3vsj:D
3 8ihg:A 300 286 0.5700 0.5567 0.5839 2.24e-122 8ihg:C
4 5jc3:A 668 113 0.0819 0.0359 0.2124 0.27 5jc3:B, 5jc7:B, 5jcf:A, 5jcf:B, 5jch:A, 5jch:B
5 8f4v:A 264 47 0.0512 0.0568 0.3191 0.42 8f4v:E, 8f4v:B, 8f4v:C, 8f4v:D
6 8ooc:J 448 30 0.0478 0.0312 0.4667 5.5 6fhs:J, 8oof:J, 8oor:J, 8oot:J
7 1rrv:A 401 41 0.0512 0.0374 0.3659 5.5 1rrv:B
8 2ebf:X 711 60 0.0683 0.0281 0.3333 6.6 2ebh:X
9 5tqr:B 809 32 0.0375 0.0136 0.3438 9.2 5bjs:B, 5vk3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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