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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDL
VQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKR
RIRKIPGVPIMYISNHRYNIERMPDDYGAPRF

The query sequence (length=192) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mq8:SL 192 192 1.0000 1.0000 1.0000 3.44e-143 7mq9:SL, 7mqa:SL
2 7d5s:5K 175 188 0.5833 0.6400 0.5957 1.40e-77 7ajt:UX, 7aju:UX, 7d4i:5K, 7d5t:5K, 7d63:5K, 6ke6:5K, 6lqp:5K, 6lqq:5K, 6lqr:5K, 6lqs:5K, 6lqt:5K, 6lqu:5K, 6lqv:5K, 7suk:SL, 5wlc:SL, 5wyj:U4, 5wyk:U4, 6zqb:UX, 6zqc:UX, 6zqd:UX, 6zqe:UX, 6zqg:UX
3 5oql:P 190 184 0.5521 0.5579 0.5761 7.22e-71 5jpq:d, 6rxt:UX, 6rxu:UX, 6rxv:UX, 6rxx:UX, 6rxy:UX, 6rxz:UX
4 5yz4:A 133 130 0.4740 0.6842 0.7000 1.31e-70
5 4mj7:A 157 136 0.1823 0.2229 0.2574 4.91e-08 4mj7:B
6 1nk2:P 77 56 0.0781 0.1948 0.2679 5.3 1nk3:P
7 5o9z:H 413 45 0.0573 0.0266 0.2444 6.5 6ahd:L, 8h6e:4D, 8h6k:4D, 8h6l:4D, 2ozb:B, 2ozb:E, 8q7n:L, 8qo9:L, 8qoz:L, 8qp8:L, 8qp9:L, 8qpa:L, 8qpb:L, 8qpe:L, 8qpk:L, 6qw6:4C, 6qx9:4C, 8qxd:L, 8qzs:L, 8r08:L, 8r09:L, 8r0b:L, 8rm5:L, 3siu:B, 3siu:E, 3siv:B, 3siv:E, 3siv:H, 3siv:K, 8y6o:L
8 3w3s:A 527 66 0.1198 0.0436 0.3485 8.7
9 3zbw:B 121 25 0.0625 0.0992 0.4800 8.8 3zbw:A
10 6wqz:C 536 56 0.0729 0.0261 0.2500 9.9 6wqz:B, 6wqz:A, 6wr4:A, 6wr4:B, 6wr4:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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