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BioLiP
>protein
TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMN

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1puf:A 77 60 0.9500 0.7403 0.9500 2.61e-37 2lp0:A
2 5zjr:A 64 58 0.7333 0.6875 0.7586 1.04e-26 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
3 1ahd:P 68 59 0.7000 0.6176 0.7119 4.79e-24
4 2r5z:A 75 56 0.6833 0.5467 0.7321 8.83e-24 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
5 4uus:A 67 54 0.6667 0.5970 0.7407 1.21e-22 4uus:E
6 2h1k:B 60 57 0.6333 0.6333 0.6667 2.15e-21 2h1k:A
7 4cyc:A 66 54 0.6667 0.6061 0.7407 2.85e-21 1b8i:A
8 8eml:A 58 54 0.5833 0.6034 0.6481 6.73e-19 8eml:B
9 2ld5:A 67 58 0.5500 0.4925 0.5690 1.13e-18
10 5eea:G 63 58 0.5000 0.4762 0.5172 1.28e-17 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
11 6es3:K 72 58 0.5667 0.4722 0.5862 1.95e-17 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
12 1b72:A 68 54 0.5833 0.5147 0.6481 2.64e-17
13 2me6:A 71 59 0.5000 0.4225 0.5085 8.51e-15
14 1ig7:A 58 58 0.5000 0.5172 0.5172 4.10e-14
15 4rdu:D 62 59 0.4500 0.4355 0.4576 4.75e-12 4rdu:A, 4xrs:I, 4xrs:G
16 1jgg:A 57 54 0.4667 0.4912 0.5185 8.54e-12 1jgg:B
17 1nk2:P 77 58 0.4667 0.3636 0.4828 4.49e-11 1nk3:P
18 3rkq:A 58 56 0.4667 0.4828 0.5000 6.01e-11 3rkq:B
19 3a01:A 78 57 0.4333 0.3333 0.4561 1.33e-10 3a01:E
20 8pna:A 67 57 0.4167 0.3731 0.4386 1.81e-10 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
21 1zq3:P 68 56 0.4167 0.3676 0.4464 1.26e-09
22 4qtr:C 57 54 0.3833 0.4035 0.4259 8.68e-09 4qtr:A, 4qtr:B, 4qtr:D
23 5flv:M 229 53 0.4167 0.1092 0.4717 9.31e-09 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
24 6m3d:C 108 56 0.3833 0.2130 0.4107 9.49e-09 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
25 6m3d:C 108 48 0.3333 0.1852 0.4167 5.68e-07 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
26 2lkx:A 68 57 0.4167 0.3676 0.4386 1.24e-08
27 3a01:F 61 57 0.4000 0.3934 0.4211 6.09e-08 3a01:B, 3lnq:A
28 1fjl:A 65 59 0.3667 0.3385 0.3729 1.03e-07 1fjl:B, 1fjl:C
29 8osb:E 62 56 0.4000 0.3871 0.4286 5.54e-07
30 4rbo:A 55 51 0.3333 0.3636 0.3922 3.81e-06 4rbo:D
31 3cmy:A 60 58 0.3667 0.3667 0.3793 1.41e-05
32 6e8c:A 135 54 0.3500 0.1556 0.3889 4.88e-05 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
33 6e8c:A 135 48 0.2667 0.1185 0.3333 0.006 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
34 9b8u:B 66 50 0.3333 0.3030 0.4000 1.55e-04 9b8u:A, 9b8u:C, 9b8u:D
35 8ejo:A 56 55 0.3000 0.3214 0.3273 1.61e-04 8ejo:B, 8ejp:A, 8ejp:B
36 1gt0:C 137 57 0.3500 0.1533 0.3684 2.28e-04 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
37 1lfu:P 82 62 0.3333 0.2439 0.3226 0.003 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
38 1le8:A 53 42 0.2667 0.3019 0.3810 0.003 1akh:A, 1yrn:A
39 8ik5:C 67 51 0.3000 0.2687 0.3529 0.005 8ike:C, 8ilw:C
40 3d1n:I 150 56 0.3167 0.1267 0.3393 0.018 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
41 4egc:A 539 40 0.2333 0.0260 0.3500 0.050
42 5hod:A 61 46 0.2833 0.2787 0.3696 0.092 5hod:D
43 7xrc:C 134 44 0.2667 0.1194 0.3636 0.24 2xsd:C
44 3qp6:A 258 45 0.2167 0.0504 0.2889 0.94 3qp8:A, 3qp8:B, 3qp8:C, 3qp8:D
45 8g8e:X 140 43 0.2667 0.1143 0.3721 1.2 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
46 4l6a:A 201 37 0.2500 0.0746 0.4054 1.2 6g22:A, 6g2l:A, 6g2m:A, 2jau:A, 2jaw:A, 4l6c:A, 1mh9:A, 4mum:A, 4mwo:A, 4nfl:A, 1q91:A, 1q92:A, 3u13:A, 4yik:A, 1z4i:A, 1z4j:A, 1z4k:A, 1z4l:A, 1z4m:A, 1z4p:X, 1z4q:A
47 8bx1:A 127 43 0.2500 0.1181 0.3488 1.2
48 3l1p:A 147 43 0.2500 0.1020 0.3488 1.2 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
49 5wc9:A 136 26 0.1833 0.0809 0.4231 2.2 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
50 5t8u:B 336 38 0.2667 0.0476 0.4211 2.3 5t8u:A
51 5c2v:D 770 25 0.1500 0.0117 0.3600 5.1 5c2v:A, 5c2w:A, 5c2w:D
52 5xyi:S 135 20 0.1500 0.0667 0.4500 5.6
53 3qp5:A 251 45 0.2000 0.0478 0.2667 6.7 3qp1:A, 3qp2:A, 3qp4:A, 3qp5:B, 3qp5:C, 3qp5:D
54 8r3g:A 335 31 0.1500 0.0269 0.2903 7.3 3bxf:A, 3bxg:A, 3bxg:B, 3bxh:A, 3bxh:B, 2okg:B, 7oyk:BBB, 7oyk:AAA, 7oyk:CCC, 7oyk:DDD, 8r3g:B, 8r3g:D, 8r3g:C
55 2c1c:A 312 54 0.3000 0.0577 0.3333 8.0 2c1c:B
56 6z1p:Bu 559 40 0.2500 0.0268 0.3750 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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