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BioLiP
>protein
TRHLKVSNCPNNSYALANVAAVSPNDFPNNIYIIIDNLFVFTTRHSNDIPPGTIGFNGNQRTWGGWSLNQDVQAKAFDLF
KYSGKQSYLGSIDIDISFRAVFDQDELAKQFVRCYESQIFSPTQYLIMEFQGHFFDLKIRNVQAIDLGDIEPTSAVATGI
ETKGILTKQTQINFFKGR

The query sequence (length=178) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1cr5:A 178 178 1.0000 1.0000 1.0000 5.12e-133 1cr5:B, 1cr5:C
2 6mdm:D 713 171 0.2528 0.0631 0.2632 1.32e-19 1d2n:A, 6ip2:B, 6ip2:C, 6ip2:D, 6ip2:E, 6ip2:F, 6ip2:A, 6mdm:A, 6mdm:B, 6mdm:C, 6mdm:E, 6mdn:A, 6mdn:B, 6mdn:C, 6mdn:D, 6mdn:E, 6mdo:A, 6mdo:B, 6mdo:C, 6mdo:D, 6mdo:E, 6mdo:F, 6mdp:A, 6mdp:B, 6mdp:C, 6mdp:D, 6mdp:E, 6mdp:F, 1nsf:A
3 1nyt:A 271 69 0.1348 0.0886 0.3478 0.30 1nyt:B, 1nyt:C, 1nyt:D
4 3o3m:D 375 55 0.0955 0.0453 0.3091 2.5 3o3m:B, 3o3n:B, 3o3n:D, 3o3o:B
5 3kg6:A 274 49 0.0955 0.0620 0.3469 2.7
6 8oh5:C 1172 68 0.1236 0.0188 0.3235 3.2 8oh5:F, 8oh5:I, 8oh5:L, 8oh9:C, 8oh9:F, 8oh9:I, 8oh9:L
7 5a0y:E 442 27 0.0674 0.0271 0.4444 5.9 5a0y:B, 5a8k:B, 5a8k:E, 7b2h:B, 7b2h:E, 5g0r:E, 5g0r:B, 1hbm:B, 1hbm:E, 1hbn:B, 1hbn:E, 1hbo:B, 1hbo:E, 1hbu:B, 1hbu:E, 3m1v:E, 3m1v:B, 3m2r:E, 3m2r:B, 3m2u:E, 3m2u:B, 3m2v:E, 3m2v:B, 3m30:E, 3m30:B, 3m32:B, 3m32:E, 1mro:E, 1mro:B, 3pot:E, 3pot:B, 7suc:b, 7suc:B, 7sxm:E, 7sxm:B
8 5t5i:C 269 72 0.1067 0.0706 0.2639 6.4 5t5i:K, 5t5m:C, 5t61:C, 5t61:I, 5t61:O, 5t61:U, 5t61:a, 5t61:g, 5t61:m, 5t61:s
9 8io8:A 788 31 0.0674 0.0152 0.3871 7.1 8io8:B, 8io9:A, 8io9:B, 8io9:C, 8io9:D, 8io9:E, 8io9:F, 8io9:G, 8io9:H, 8io9:I, 8io9:J, 8io9:K, 8io9:L, 8ioa:A, 8ioa:B, 8ioe:A, 8ioe:B, 8ioe:C, 8ioe:D, 8ioe:E, 8ioe:F, 8ioe:G, 8ioe:H, 8ioe:I, 8ioe:J, 8ioe:K, 8ioe:L
10 8duj:A 3823 36 0.0730 0.0034 0.3611 9.6
11 8duj:D 3865 36 0.0730 0.0034 0.3611 9.6
12 8duj:J 3892 36 0.0730 0.0033 0.3611 9.6
13 8duj:G 3933 36 0.0730 0.0033 0.3611 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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