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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TRDQTSYGDEIDKFWLTQYVIHRESYDFYSVQVDYTAVGLMSTPNVAESYQSKFKGRNGLDKVLGDSETTRVKINSVILD
KPHGVATIRFTTVRRVRSNPVDDQPQRWIAIMGYEYKSLAMNAEQRYVNPLGFRVTSYRVNPE

The query sequence (length=143) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5wio:A 143 143 1.0000 1.0000 1.0000 8.70e-106 5wic:B, 5wii:A, 5wip:A
2 4aky:A 134 140 0.4406 0.4701 0.4500 8.71e-36 4aky:B, 4aky:C, 4aky:D, 4aky:E
3 8rta:E 169 140 0.4196 0.3550 0.4286 1.61e-35
4 4nhf:F 143 140 0.3986 0.3986 0.4071 8.92e-34 4nhf:B, 4nhf:C
5 8u19:A 403 31 0.0839 0.0298 0.3871 1.3 8u09:A, 8u1i:A
6 5wkr:A 215 41 0.0839 0.0558 0.2927 1.6 5wks:A
7 2wbv:B 186 35 0.0979 0.0753 0.4000 1.7 2w9l:C, 2w9l:D, 2w9l:E, 2w9l:F, 2w9l:H, 2w9l:I, 2w9l:L, 2w9l:M, 2w9l:N, 2w9l:Q, 2w9l:R, 2w9l:S, 2wbv:D, 2wbv:A, 2wbv:C, 2wbv:E, 2wbv:F
8 1amp:A 291 70 0.1538 0.0756 0.3143 2.7 2anp:A, 3b35:A, 3b3c:A, 3b3s:A, 3b3t:A, 3b3v:A, 3b3w:A, 3b7i:A, 1cp6:A, 2dea:A, 3fh4:A, 1ft7:A, 1igb:A, 2iq6:A, 1lok:A, 2nyq:A, 2prq:A, 1rtq:A, 1txr:A, 3vh9:A, 1xry:A
9 7usw:A 608 67 0.1259 0.0296 0.2687 2.8 7usw:B, 7usx:A, 7usx:B, 7usy:A, 7usy:B
10 5w1j:A 584 42 0.0909 0.0223 0.3095 4.4 5w1j:B, 5w1l:A, 5w1l:B
11 3jck:G 257 25 0.0769 0.0428 0.4400 6.6 3j47:V, 4o8x:B, 4ocl:B, 4ocl:E, 4ocm:B, 4ocm:E, 4owp:B, 5u4p:B, 5w83:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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