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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TQTTSPDILLGPLFNDVQSAKLFPDQKTFADAVPKSDPLMILADYRMQHTQSSFDLRHFVEMNFTLPAEGEKYVPPAGQS
LREHIDDLWPVLTRTTDKASNKWDSLLPLPKPYVVPGGRFREVYYWDSYFTMLGLAESDHWDKISDMVDNFAYEIDTFGH
IPNGNRSYYLSRSQPPFFSMMVELLATHDSDALKKYRPQMEKEYAYWMDGVDALQPGQANKRVVKLDDGAILNRYWDDRD
TPRPESWLDDVNTAKSNPNRPATEIYRDLRSAAASGWDFSSRWMDDPQKLGTIRTTSIVPVDLNALMFKMEKLLARASQE
SGDAASASKYEALATARQKAIESHLWNDKEGWYADYDLKSKKVRNQLTAAALFPLYVKAAAQDRADKVAAATSSRLLKPG
GIATTTVNSGQQWDAPNGWAPLQWVAAEGLQNYGQEKVSMDVTWRFLKNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPL
QDGFGWSNGVTLKMLDRVCPKAKPCDSVPENQ

The query sequence (length=512) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5z66:A 512 512 1.0000 1.0000 1.0000 0.0
2 2jg0:A 507 505 0.8008 0.8087 0.8119 0.0 2jf4:A, 2jjb:A, 2jjb:B, 2jjb:C, 2jjb:D, 2wyn:A, 2wyn:B, 2wyn:C, 2wyn:D
3 7eaw:A 560 437 0.3223 0.2946 0.3776 3.45e-78 7eaw:B
4 5n6n:C 698 432 0.2637 0.1934 0.3125 2.79e-43 5m4a:A
5 4wvc:A 413 214 0.1074 0.1332 0.2570 2.53e-07 4wvc:B
6 4wvb:A 394 214 0.1074 0.1396 0.2570 4.43e-07
7 1v7v:A 779 90 0.0469 0.0308 0.2667 0.14 1v7w:A, 1v7x:A
8 8dtz:A 4061 100 0.0566 0.0071 0.2900 0.34 8dtz:B, 8dtz:C, 8dtz:D
9 5mqr:A 1082 184 0.0820 0.0388 0.2283 0.45 5mqs:A
10 4jj7:A 241 41 0.0352 0.0747 0.4390 0.86 2c2z:A, 2c2z:B, 1f9e:A, 1f9e:B, 1f9e:C, 1f9e:D, 1f9e:E, 1f9e:F, 1f9e:G, 1f9e:H, 1f9e:I, 1f9e:J, 1f9e:K, 1f9e:L, 3h11:B, 3kjn:A, 3kjn:B, 3kjq:A, 3kjq:B, 4prz:A, 4ps1:A, 4ps1:B, 4ps1:C, 4ps1:D, 1qdu:A, 1qdu:B, 1qdu:C, 1qdu:D, 1qdu:E, 1qdu:F, 1qdu:G, 1qdu:H, 1qdu:I, 1qdu:J, 1qdu:K, 1qdu:L, 1qtn:A, 1qtn:B, 6x8h:A, 6x8h:B, 2y1l:C, 2y1l:D, 2y1l:A, 2y1l:B
11 8om3:d 144 93 0.0391 0.1389 0.2151 1.3
12 5z16:B 739 136 0.0605 0.0419 0.2279 1.4 5z16:A
13 2ce7:D 413 57 0.0352 0.0436 0.3158 1.7 2ce7:A, 2ce7:B, 2ce7:E, 2ce7:F, 2cea:A, 2cea:B, 2cea:D, 2cea:E, 2cea:F
14 7y1u:A 723 88 0.0469 0.0332 0.2727 1.9
15 2b0t:A 735 100 0.0508 0.0354 0.2600 2.0 3mbc:A, 3mbc:B
16 3tts:A 675 59 0.0352 0.0267 0.3051 2.7 3tts:B, 3tts:C, 3tts:D, 3tts:E, 3tts:F, 3tty:A, 3tty:B, 3tty:C, 3tty:D, 3tty:E, 3tty:F
17 8dvv:A 3886 84 0.0469 0.0062 0.2857 4.0 8dvv:B, 8dvv:C, 8dvv:D
18 6wou:A 3921 84 0.0469 0.0061 0.2857 4.1 6wou:B, 6wou:C, 6wou:D, 6wov:A, 6wov:B, 6wov:C, 6wov:D
19 8dty:A 4004 84 0.0469 0.0060 0.2857 4.1 8dty:B, 8dty:C, 8dty:D
20 7ua3:A 4443 84 0.0469 0.0054 0.2857 5.4 7ua3:B, 7ua3:C, 7ua3:D, 7ua4:A, 7ua4:B, 7ua4:C, 7ua4:D
21 6jiy:A 3521 84 0.0469 0.0068 0.2857 5.9 6ji8:A, 6ji8:D, 6ji8:G, 6ji8:J, 6jii:B, 6jii:E, 6jii:H, 6jii:K, 6jiu:A, 6jiu:D, 6jiu:G, 6jiu:J, 6jiy:D, 6jiy:G, 6jiy:J, 6jv2:A, 6jv2:C, 6jv2:E, 6jv2:G
22 8uxh:A 4004 84 0.0469 0.0060 0.2857 6.0 8uxh:B, 8uxh:C, 8uxh:D, 8uxi:A, 8uxi:B, 8uxi:C, 8uxi:D
23 5go9:A 3423 84 0.0469 0.0070 0.2857 6.1 5go9:B, 5go9:C, 5go9:D, 5goa:A, 5goa:B, 5goa:C, 5goa:D
24 8uxl:A 4232 84 0.0469 0.0057 0.2857 6.1 7u9q:A, 7u9q:D, 7u9q:B, 7u9q:C, 7u9r:A, 7u9r:D, 7u9r:B, 7u9r:C, 7u9t:A, 7u9t:D, 7u9t:B, 7u9t:C, 7u9x:A, 7u9x:B, 7u9x:C, 7u9x:D, 7u9z:A, 7u9z:B, 7u9z:C, 7u9z:D, 7ua1:A, 7ua1:B, 7ua1:C, 7ua1:D, 7ua5:A, 7ua5:B, 7ua5:C, 7ua5:D, 7ua9:A, 7ua9:B, 7ua9:C, 7ua9:D, 8uq2:A, 8uq2:B, 8uq2:C, 8uq2:D, 8uq3:A, 8uq3:B, 8uq3:C, 8uq3:D, 8uq4:A, 8uq4:B, 8uq4:C, 8uq4:D, 8uq5:A, 8uq5:B, 8uq5:C, 8uq5:D, 8uxc:A, 8uxc:B, 8uxc:C, 8uxc:D, 8uxe:A, 8uxe:B, 8uxe:C, 8uxe:D, 8uxf:A, 8uxf:B, 8uxf:C, 8uxf:D, 8uxg:A, 8uxg:B, 8uxg:C, 8uxg:D, 8uxl:B, 8uxl:C, 8uxl:D, 8uxm:A, 8uxm:B, 8uxm:C, 8uxm:D
25 6jrs:A 3488 84 0.0469 0.0069 0.2857 6.1 6jrs:D, 6jrs:G, 6jrs:J
26 6jgz:B 3485 84 0.0469 0.0069 0.2857 6.2 6jg3:A, 6jg3:B, 6jg3:C, 6jg3:D, 6jgz:D, 6jgz:F, 6jgz:H, 6jh6:B, 6jh6:D, 6jh6:F, 6jh6:H, 6jhn:A, 6jhn:C, 6jhn:E, 6jhn:G, 6ji0:A, 6ji0:C, 6ji0:E, 6ji0:G, 6jrr:A, 6jrr:C, 6jrr:E, 6jrr:G
27 3s6i:D 207 129 0.0566 0.1401 0.2248 7.4 3s6i:A
28 2qo3:B 873 17 0.0215 0.0126 0.6471 9.4 2qo3:A
29 3kds:E 427 57 0.0332 0.0398 0.2982 9.9 2ce7:C, 2cea:C, 3kds:F, 3kds:G, 7tdo:A, 7tdo:B, 7tdo:C, 7tdo:D, 7tdo:E, 7tdo:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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