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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TQQEKEFLESYPQNCPPDALPGTPGNLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKW
RKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPAC
SRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFI
LGSSYQKELLKQIPAENLPVKFGGKSEVDGLYLSDIGPWRDPKYIGPEGEAPEA

The query sequence (length=294) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6f0e:A 300 297 0.9966 0.9767 0.9865 0.0 7zg9:A, 7zg9:B, 7zga:A, 7zgb:A, 7zgc:A, 7zgd:A
2 3b7n:A 307 296 0.6463 0.6189 0.6419 4.00e-144 3b7z:A, 6sld:A
3 7y10:A 291 264 0.3605 0.3643 0.4015 1.59e-58 7y10:B, 7y11:A, 7y11:B
4 1olm:E 397 251 0.2517 0.1864 0.2948 6.00e-27 1olm:A, 1olm:C, 4omj:A, 4omj:B, 4omk:A, 4omk:B
5 4tlg:A 396 246 0.2585 0.1919 0.3089 4.46e-26 4tlg:B
6 3w68:C 252 245 0.2245 0.2619 0.2694 1.92e-16
7 1oiz:A 265 220 0.2143 0.2377 0.2864 2.07e-15 5mue:A, 5mug:A, 1oip:A, 1oiz:B, 1r5l:A, 3w67:A, 3w67:B, 3w67:C, 3w67:D, 3w68:A, 3w68:B, 3w68:D, 6zpd:A
8 4fmm:B 325 219 0.1803 0.1631 0.2420 2.45e-11 4j7q:A, 4j7q:B
9 4ciz:A 284 240 0.2109 0.2183 0.2583 5.00e-11 4cj6:A, 3hx3:A, 3hy5:A
10 7wvt:A 364 227 0.2143 0.1731 0.2775 1.02e-09 7wwd:A, 7wwg:A
11 6w32:B 288 154 0.1361 0.1389 0.2597 2.45e-05 6w32:A, 6w32:C
12 6lpf:B 1006 179 0.1497 0.0437 0.2458 0.92 6kid:A, 6kie:A, 6kqy:A, 6kr7:A, 6lpf:A, 6lr6:A, 6lr6:B
13 3kow:B 728 55 0.0578 0.0234 0.3091 2.5 3kow:A, 3kow:C, 3kow:D, 3kox:A, 3kox:B, 3kox:C, 3kox:D, 3koy:A, 3koy:B, 3koy:D, 3koy:C, 3koz:A, 3koz:B, 3koz:C, 3koz:D, 3kp0:A, 3kp0:B, 3kp0:C, 3kp0:D, 3kp1:C, 3kp1:A, 3kp1:D, 3kp1:B
14 2z5x:A 513 67 0.0782 0.0448 0.3433 3.1 2bxr:A, 2bxr:B, 2bxs:A, 2bxs:B, 2z5y:A
15 5j7w:C 315 76 0.0850 0.0794 0.3289 3.2 5j7w:D, 4o7u:B, 4o7u:D, 6qxs:B, 6qxs:D, 6qya:B, 6qya:D, 3uwl:B, 3uwl:D
16 6nzu:A 402 65 0.0612 0.0448 0.2769 3.3 6nzu:E, 8pk8:A, 8pk9:A, 8pka:A, 7rtk:A, 8tvt:A, 6uxe:A, 6w1d:A, 6wi2:A, 6wih:A, 5wkp:A, 5wkp:E, 5wlw:A, 5wlw:E
17 6qxs:A 292 76 0.0850 0.0856 0.3289 3.3 6qxs:C, 6qya:A, 6qya:C
18 5c5c:A 432 156 0.1088 0.0741 0.2051 3.4
19 6az1:O 137 48 0.0476 0.1022 0.2917 7.9 8a3w:SO, 8a98:SO, 8ova:AH, 8ove:AH, 8ovj:SO, 8rxh:SO, 8rxx:SO, 5t2a:AH
20 3mq4:A 386 87 0.0748 0.0570 0.2529 8.1
21 7wmz:C 292 36 0.0612 0.0616 0.5000 9.5 7wmz:E, 7wmz:A, 7wmz:B, 7wmz:D, 7wmz:F
22 8jd6:R 774 56 0.0612 0.0233 0.3214 9.7 7e9h:R, 7e9h:S, 8jd4:4, 8jd5:4, 8jd6:S

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218