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BioLiP
>protein
TQPQNMAFRAKATRTARRESQETFWSRFGISQSCGSRFENGENLPFPIYLLLHFYIEGQITDRQLADLRG

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5j2y:A 70 70 1.0000 1.0000 1.0000 1.27e-48 5j2y:B
2 3pa1:A 315 42 0.1857 0.0413 0.3095 0.40 5bsx:A, 5bsy:A, 6gw1:A, 6gw1:B, 6gw2:A, 6gw2:B, 6gy9:A, 6gy9:B, 5hza:A, 5hza:B, 5hzb:B, 5hzb:A, 3ony:A, 3ony:B, 3ony:C, 3pa1:B, 3pa2:A, 3pa2:B, 3q38:A, 3q39:A, 3q39:B, 3q3a:B, 3q3a:A, 3ry8:A, 8y6c:B, 8y6c:A, 8y6d:B, 8y6d:A, 4z4r:A, 4z4r:B, 4z4s:A, 4z4s:B, 4z4t:A, 4z4t:B, 4z4u:A, 4z4u:B, 4z4v:A, 4z4v:B, 4z4w:A, 4z4w:B, 4z4y:A, 4z4z:A, 4z4z:B
3 8tac:B 66 39 0.1857 0.1970 0.3333 1.2
4 8ch6:V 285 46 0.2143 0.0526 0.3261 1.2 7qtt:V
5 8i0s:Y 320 46 0.2143 0.0469 0.3261 1.4 8i0t:Y, 8i0u:Y, 8i0v:Y
6 1pp9:O 424 19 0.1429 0.0236 0.5263 7.1 2a06:B, 4d6t:B, 4d6t:O, 4d6u:B, 4d6u:O, 7dgq:l, 7dgq:x, 7dgr:l, 7dgr:x, 7dgs:l, 7dgs:x, 6fo0:O, 6fo0:B, 6fo2:O, 6fo2:B, 1pp9:B, 1ppj:O, 1ppj:B, 6qbx:a2, 6qbx:a4, 6qc3:a2, 6qc3:a4, 7tz6:B, 7tz6:O
7 4krg:A 466 23 0.1143 0.0172 0.3478 8.9 4krg:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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