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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TQITGVVLAAGRSTPKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASAVRAAMALDGTDVVVVEDCAASLRVALAR
VHPRATGIVLMLGDQPQVAPATLRRIIDVGPATEIMVCRYADGVGHPFWFSRTVFGELARLHGDKGVWKLVHSGRHPVRE
LAVDGCVPLDVDTWDDYRRLLESV

The query sequence (length=184) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2yes:B 186 186 0.9837 0.9731 0.9731 2.46e-125 2yes:A
2 8b6d:A 291 64 0.1250 0.0790 0.3594 0.007 8b68:A, 8b6d:B
3 2ux8:A 255 130 0.1739 0.1255 0.2462 0.007 2ux8:H
4 2ux8:G 288 130 0.1739 0.1111 0.2462 0.008 2ux8:B, 2ux8:C, 2ux8:D, 2ux8:E, 2ux8:F
5 4n7c:A 174 77 0.1250 0.1322 0.2987 0.065
6 2qa2:A 489 104 0.1467 0.0552 0.2596 0.29
7 5i1f:A 290 47 0.0707 0.0448 0.2766 0.51
8 5ve7:A 282 47 0.0707 0.0461 0.2766 0.94
9 7vru:B 494 41 0.0815 0.0304 0.3659 1.2 7vs4:B
10 6fw8:B 417 152 0.2011 0.0887 0.2434 2.6 6esd:B, 6esd:A, 6fw7:B, 6fw7:A, 6fw8:A, 6fw9:B, 6fw9:A, 6fwa:B, 6fwa:A, 6g2p:B, 6g2p:A, 5g3s:A, 5g3s:B, 5g3t:A, 5g3t:B, 5g3t:C, 5g3t:D, 5g3u:A, 5g3u:B, 5zbc:A, 5zbc:B, 5zbd:A, 5zbd:B
11 2dmj:A 106 58 0.0924 0.1604 0.2931 2.9
12 2n8a:A 214 58 0.0924 0.0794 0.2931 3.0 4av1:D, 4av1:B, 2l30:A, 2l31:A, 3od8:D, 3od8:F, 3oda:D, 3oda:F, 3odc:A, 3odc:B, 3ode:A, 3ode:B, 7s81:N, 7s81:A
13 2zoo:A 438 72 0.1304 0.0548 0.3333 4.6
14 6i59:A 682 66 0.1087 0.0293 0.3030 4.8 5mzn:A
15 2c3c:A 522 68 0.0978 0.0345 0.2647 4.9 2c3c:B, 2c3d:A, 2c3d:B, 7mgn:A, 7mgn:B, 7mgo:B, 1mo9:A, 1mo9:B, 1mok:A, 1mok:B, 1mok:C, 1mok:D, 3q6j:A, 3q6j:B
16 5if9:A 251 53 0.1141 0.0837 0.3962 5.0 5if9:B, 5ihp:A, 5ihp:B
17 4mnd:A 408 89 0.1467 0.0662 0.3034 5.1
18 5erm:B 314 56 0.0924 0.0541 0.3036 6.0 5er8:B, 5erm:A
19 8qbn:Y 119 54 0.0652 0.1008 0.2222 6.3
20 8g0h:C 227 57 0.0924 0.0749 0.2982 7.5 4av1:A, 4av1:C, 4dqy:D, 4dqy:A, 4dqy:B, 4dqy:E, 8g0h:A, 2jvn:A, 3od8:A, 3od8:B, 3od8:C, 3od8:E, 3od8:G, 3od8:H, 3oda:A, 3oda:B, 3oda:C, 3oda:E, 3oda:G, 3oda:H, 4opx:D, 4opx:A, 4oqa:D, 4oqa:A, 4oqb:D, 4oqb:A, 2riq:A, 7s68:A, 7s6h:C, 7s6h:A, 7s6m:A, 7s6m:C, 7s81:I, 7s81:F, 7s81:G, 7s81:O, 7s81:J, 7s81:B
21 7o7t:A 716 105 0.1685 0.0433 0.2952 7.6
22 7a7b:A 323 31 0.0707 0.0402 0.4194 7.8 7a7b:B, 7a7b:C, 7a7b:D, 7a7b:E, 7a7b:F, 7a7b:H, 7apr:A, 7apr:B, 7apr:C, 7apr:D, 7apr:E, 7apr:F, 7apr:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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