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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TQFNITWEEQLQALSKLDGLHHPHKLEDISVHWVFNPVDISVFVTCATMSSHNTHYTFKPQSSPDDAMVREYVLSRIIAD
NLKYVDNLYLAAGAVICGNDEYISDGNVVGIHIADGNKLILPVIEFMPGVHVDDISDKLIKSSSYQGIFKTDNLEEFEFL
VDKKNANNVKELILAYTDYFANKLAFKDPAEPAVEMYQFIDRTEVYFSFEGCHPDVEEVLFTIKIVRYNQPLNSTAMQVF
LKNPLLSHIRTVV

The query sequence (length=253) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ft0:A 255 255 0.9960 0.9882 0.9882 0.0 5ft0:B, 5ft1:A, 5ft1:B, 5ft1:E, 5ft1:G, 5ft1:I, 5ft1:K
2 1is2:A 637 111 0.0949 0.0377 0.2162 5.1 2ddh:A, 1is2:B
3 7q86:A 612 111 0.0988 0.0408 0.2252 6.4 7q86:B
4 7dnz:A 591 69 0.0751 0.0321 0.2754 7.1 7dny:A, 7dny:B, 7dnz:B, 7ekl:A, 7ekl:B, 8k7b:A, 8k7b:B, 8k7c:A, 8k7c:B, 3nh9:A, 3nha:A, 3nhb:A, 8yr3:A, 8yr3:B, 8yr4:B, 8yr4:A
5 7qep:S0 203 116 0.1067 0.1330 0.2328 7.7
6 4v6x:CA 255 31 0.0474 0.0471 0.3871 7.9 7a01:92, 8a3d:D, 5aj0:AA, 8b5l:A, 8b6c:A, 9bdl:AL02, 9bdn:AL02, 9bdp:AL02, 7bhp:LA, 8bhf:j3, 8bpo:A2, 8btk:BA, 7cpu:LA, 7cpv:LA, 4d5y:A, 4d67:A, 6d90:A, 6d9j:A, 9f1b:BA, 9f1c:BA, 9f1d:BA, 7f5s:LA, 8fkz:SF, 8fl2:SF, 8fl3:SF, 8fl4:SF, 8fl6:SF, 8fl7:SF, 8fl9:SF, 8fla:SF, 8flb:SF, 8flc:SF, 8fld:SF, 8fle:SF, 8flf:SF, 6frk:A, 6ftg:A, 6fti:A, 6ftj:A, 8g5y:LA, 8g5z:LA, 8g60:LA, 8g61:LA, 8g6j:LA, 8glp:LA, 6gz3:AA, 6gz4:AA, 6gz5:AA, 6hcf:A3, 6hcj:A3, 6hcm:A3, 6hcq:A3, 8idt:m, 8idy:m, 8ie3:m, 8ifd:1D, 8ife:1D, 8ine:m, 8inf:m, 8ink:m, 6ip5:1D, 6ip6:1D, 6ip8:1D, 8ipd:m, 8ipx:m, 8ipy:m, 8ir1:m, 8ir3:m, 3j7o:A, 3j7p:A, 3j7q:A, 3j7r:A, 3j92:A, 3jag:A, 3jah:A, 3jai:A, 3jaj:A, 3jan:A, 8jdj:G, 8jdk:G, 8jdl:G, 8jdm:G, 8k2c:LA, 5lks:LA, 6lqm:m, 6lsr:m, 6lss:m, 7ls1:D2, 7ls2:D2, 6lu8:m, 5lzs:A, 5lzt:A, 5lzu:A, 5lzv:A, 5lzw:A, 5lzx:A, 5lzy:A, 5lzz:A, 7mdz:A, 6mtb:A, 6mtc:A, 6mtd:A, 6mte:A, 7nfx:A, 7nwg:A3, 7nwh:A, 7nwi:A, 7o7y:BA, 7o7z:BA, 7o80:BA, 7o81:BA, 7obr:A, 8ohd:LA, 8oj0:LA, 8oj5:LA, 8oj8:LA, 6ole:A, 6olf:A, 6olg:AA, 6oli:A, 6olz:AA, 6om0:A, 6om7:A, 7ow7:D, 7oya:A1, 7oyb:A1, 7oyc:A1, 7oyd:A, 8p2k:BA, 6p5i:AA, 6p5j:AA, 6p5k:AA, 6p5n:AA, 8q7z:BA, 8q87:BA, 8qfd:A, 7qgg:A, 8qoi:LA, 7qvp:LA, 7qvp:MA, 7qwq:A, 7qwr:A, 7qws:A, 6qzp:LA, 6r5q:A, 6r6g:A, 6r6p:A, 6r7q:A, 8rjb:A, 8rjc:A, 8rjd:A, 8scb:A, 6sgc:A2, 6swa:A, 5t2c:D, 6t59:A3, 7tm3:A, 7toq:AL02, 7tor:AL02, 7tut:A, 7ucj:A, 7uck:A, 4ug0:LA, 4ujc:BA, 4ujd:AA, 4uje:CA, 4v5z:Ba, 6w6l:A, 6xa1:LA, 7xnx:LA, 7xny:LA, 8xsx:LA, 8xsy:LA, 8xsz:LA, 6y0g:LA, 8y0w:LA, 8y0x:LA, 6y2l:LA, 6y57:LA, 6y6x:LA, 8yoo:LA, 8yop:LA, 6z6l:LA, 6z6m:LA, 6z6n:LA, 7zjw:LD, 7zjx:LD, 6zm7:LA, 6zme:LA, 6zmi:LA, 6zmo:LA, 6zvk:92
7 9j9a:A 248 21 0.0395 0.0403 0.4762 9.0
8 7dkb:A 697 28 0.0514 0.0187 0.4643 9.5 7dkb:B, 7dkc:A, 7dkc:B, 7dkd:A, 7dkd:B, 7dke:A, 7dke:B, 8grt:A, 8grt:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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