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BioLiP
>protein
TQACLPVGSRKNGMNVNFYKYSLQDSTTYSDPQYMAYKYSDTKKLGSVSGQTHLSIYYDLNTAFWNTASWSSDLFGFYTT
PTNVTVEMTGYFLPPQTGSYTFKFATVDDSAILSVGGSIAFECCAQEQPPITSTDFTINGIKPWGAAAPTDIKGSTYMYA
GYYYPIKIVYSNAKALARLPVSVVLPDGTEVNDDFEGYVYSFDDDLSQSNCTIPDPS

The query sequence (length=217) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4gq7:A 220 217 0.9862 0.9727 0.9862 3.10e-158 4lhk:A, 4lhk:B
2 2xjp:A 258 244 0.7512 0.6318 0.6680 3.25e-113 4lhn:A, 2xjr:A, 2xjs:A, 2xjt:A, 2xju:A, 2xjv:A
3 5a3l:A 209 203 0.2903 0.3014 0.3103 3.69e-28 5a3l:B, 5a3l:C, 5a3l:D, 5a3m:A, 5a3m:B, 5a3m:C, 5a3m:D
4 6hos:A 213 214 0.2903 0.2958 0.2944 1.75e-22 6hos:B
5 6y98:A 225 187 0.2627 0.2533 0.3048 2.29e-17 4cp0:A, 4cp1:A, 4cp2:A
6 4coy:A 232 218 0.2949 0.2759 0.2936 2.56e-14 4cou:A, 4cov:A, 4cow:A, 4coz:A
7 6y9j:A 231 216 0.2673 0.2511 0.2685 4.88e-13 4a3x:A, 4af9:A, 4afa:A, 4afb:A, 4afc:A, 4asl:A, 4d3w:A
8 5nrl:U 196 50 0.0599 0.0663 0.2600 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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