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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TPWSKSELVRQLRDLGVRSGDMVMPHVSLRAVGPLADGPQTLVDALIEAVGPTGNILAFVSWRDSPYEQTLGHDAPPAAI
AQSWPAFDPDHAPAYPGFGAINEFIRTYPGCRRSAHPDASMAAIGPDAAWLVAPHEMGAAYGPRSPIARFLAHAGKILSI
GAGPDAVTALHYAEAVARIEGKRRVTYSMPLLREGKRVWVTTSDWDSNGILDEYAAPDGPDAVERIARDYLARTRVAQGP
VGGAQSRLIDAADIVSFGIEWLEARHAA

The query sequence (length=268) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6bc2:A 268 268 0.9963 0.9963 0.9963 0.0 6bbz:A, 6bc3:A, 6bc4:A, 6bc5:A, 6bc7:A, 6np2:A, 6np3:A, 6np4:A, 6np5:A, 6nti:A, 6ntj:A, 6o5u:A
2 7q1d:D 272 264 0.3806 0.3750 0.3864 4.64e-60 7mqk:A, 7mqk:B, 7mqk:C, 7mqk:D, 7mql:A, 7mql:B, 7mql:C, 7mql:D, 7mqm:A, 7mqm:B, 7mqm:C, 7mqm:D, 7q0q:A, 7q0q:B, 7q10:A, 7q1d:A, 7q1d:B, 7q1d:C, 7q1x:A
3 5ht0:C 261 264 0.3694 0.3793 0.3750 1.46e-52 5ht0:A, 5ht0:B, 5ht0:D, 5ht0:E, 5ht0:F, 7kes:A, 7kes:B, 6mn0:A, 6mn0:B, 6mn0:C, 6mn0:F, 6mn0:D, 6mn0:E, 6mn1:A, 6mn1:B, 6mn2:A, 6mn2:B
4 6mb6:A 268 248 0.3545 0.3545 0.3831 2.46e-44 6mb4:B, 6mb5:A, 6mb6:C, 6mb7:A, 6mb9:A, 6mb9:B, 6mb9:D, 6mb9:C
5 2nyg:A 270 266 0.2687 0.2667 0.2707 5.03e-29 2nyg:B, 2nyg:C, 2nyg:D, 2nyg:E
6 6mn5:D 260 264 0.3358 0.3462 0.3409 2.36e-28 6mn3:A, 6mn3:B, 6mn4:A, 6mn4:B, 6mn4:C, 6mn4:D, 6mn4:E, 6mn4:F, 6mn5:A, 6mn5:B, 6mn5:C, 6mn5:E, 6mn5:F
7 3kzl:A 266 267 0.2873 0.2895 0.2884 4.20e-28 3ijw:A, 3ijw:B, 3kzl:D, 3kzl:C, 3kzl:B, 3n0m:A, 3n0m:B, 3n0s:A, 3n0s:D, 3n0s:C, 3n0s:B, 3slb:A, 3slb:D, 3slb:C, 3slb:B, 3slf:A, 3slf:B
8 3sma:B 268 272 0.3246 0.3246 0.3199 7.43e-22 3sma:A, 3sma:C, 3sma:D
9 4a15:A 596 46 0.0672 0.0302 0.3913 1.6 5h8w:A, 2vsf:A
10 7snx:A 157 27 0.0448 0.0764 0.4444 5.2
11 1x92:B 197 64 0.0672 0.0914 0.2812 5.4 1x92:A
12 5v2c:c 458 66 0.0709 0.0415 0.2879 6.2 3a0b:C, 3a0b:c, 3a0h:C, 3a0h:c, 2axt:C, 2axt:c, 5b5e:C, 5b5e:c, 5b66:C, 5b66:c, 7cji:C, 7cji:c, 7cjj:C, 7cjj:c, 7cou:C, 7cou:c, 7czl:C, 7czl:c, 7d1t:C, 7d1t:c, 7d1u:C, 7d1u:c, 6dhe:C, 6dhe:c, 6dhf:C, 6dhf:c, 6dhg:C, 6dhg:c, 6dhh:C, 6dhh:c, 6dho:C, 6dho:c, 6dhp:C, 6dhp:c, 7dxh:c, 5e79:C, 5e79:c, 5e7c:C, 5e7c:c, 7eda:C, 9evx:C, 9evx:c, 8ez5:C, 8ez5:c, 8f4c:C, 8f4c:c, 8f4d:C, 8f4d:c, 8f4e:C, 8f4e:c, 8f4f:C, 8f4f:c, 8f4g:C, 8f4g:c, 8f4h:C, 8f4h:c, 8f4i:C, 8f4i:c, 8f4j:C, 8f4j:c, 8f4k:C, 8f4k:c, 4fby:C, 4fby:P, 8gn0:C, 8gn0:c, 8gn1:C, 8gn1:c, 8gn2:C, 8gn2:c, 5gth:C, 5gth:c, 5gti:C, 5gti:c, 5h2f:C, 5h2f:c, 4il6:C, 4il6:c, 8ir5:C, 8ir5:c, 8ir6:C, 8ir6:c, 8ir7:C, 8ir7:c, 8ir8:C, 8ir8:c, 8ir9:C, 8ir9:c, 8ira:C, 8ira:c, 8irb:C, 8irb:c, 8irc:C, 8irc:c, 8ird:C, 8ird:c, 8ire:C, 8ire:c, 8irf:C, 8irf:c, 8irg:C, 8irg:c, 8irh:C, 8irh:c, 8iri:C, 8iri:c, 4ixq:C, 4ixq:c, 4ixr:C, 4ixr:c, 6jlj:C, 6jlj:c, 6jlk:C, 6jlk:c, 6jll:C, 6jll:c, 6jlm:C, 6jlm:c, 6jln:C, 6jln:c, 6jlo:C, 6jlo:c, 6jlp:C, 6jlp:c, 5kaf:C, 5kaf:c, 5kai:C, 5kai:c, 3kzi:C, 5mx2:C, 5mx2:c, 7nho:C, 7nhp:C, 7nhq:C, 4pbu:C, 4pbu:c, 4pj0:C, 4pj0:c, 7rf1:C, 7rf1:c, 7rf2:C, 7rf2:c, 7rf3:C, 7rf3:c, 7rf4:C, 7rf4:c, 7rf5:C, 7rf5:c, 7rf6:C, 7rf6:c, 7rf7:C, 7rf7:c, 7rf8:C, 7rf8:c, 4rvy:C, 4rvy:c, 1s5l:C, 1s5l:c, 5tis:C, 5tis:c, 4tnh:C, 4tnh:c, 4tni:C, 4tni:c, 4tnj:C, 4tnj:c, 4tnk:C, 4tnk:c, 4ub6:C, 4ub6:c, 4ub8:C, 4ub8:c, 5v2c:C, 4v62:AC, 4v62:BC, 4v82:AC, 4v82:BC, 6w1o:C, 6w1o:c, 6w1p:C, 6w1p:c, 6w1q:C, 6w1q:c, 6w1r:C, 6w1r:c, 6w1t:C, 6w1t:c, 6w1u:C, 6w1u:c, 6w1v:C, 6w1v:c, 1w5c:C, 1w5c:I, 5ws5:C, 5ws5:c, 5ws6:C, 5ws6:c, 3wu2:C, 3wu2:c, 7yq2:C, 7yq2:c, 7yq7:C, 7yq7:c, 5zzn:C, 5zzn:c
13 8bo9:A 174 27 0.0448 0.0690 0.4444 9.6 8aq6:A, 8aq6:G, 8aq6:H, 8aqi:A, 8aqi:B, 8aqi:G, 8aqi:H, 8bo9:B, 8bo9:C, 7snt:A, 7snw:A, 7snw:B, 7snw:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218