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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TPPVTLEAARDNDFAFDWQAYTPPVAHRLGVQEVEASIETLRNYIDWTPFFMTWSLAGKYPRILEDEVVGVEAQRLFKDA
NDMLDKLSAEKTLNPRGVVGLFPANRVGDDIEIYRDETRTHVINVSHHLRQQTEKTGFANYCLADFVAPKLSGKADYIGA
FAVTGGLEEDALADAFEAQHDDYNKIMVKALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELIRENYQGIRPAPGYP
ACPEHTEKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQVEDYARRKGMSVTEVERWLAP
NLGYDA

The query sequence (length=326) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3bul:A 577 326 1.0000 0.5650 1.0000 0.0 6bdy:A, 1bmt:A, 1bmt:B, 6bm5:A, 6bm6:A, 3iv9:A, 3iva:A, 1k7y:A, 1k98:A, 1msk:A
2 8sse:A 507 231 0.2086 0.1341 0.2944 1.39e-22 8sse:B, 8sse:C, 8sse:D, 8sse:E, 8sse:F
3 8jq5:B 421 127 0.0951 0.0736 0.2441 0.66 8jq3:A, 8jq3:B, 8jq3:C, 8jq3:D, 8jq4:A, 8jq4:B, 8jq4:C, 8jq4:D, 8jq5:A, 8jq5:C, 8jq5:D, 8jq6:A, 8jq6:B, 8jq6:C, 8jq6:D
4 3tl1:A 158 63 0.0613 0.1266 0.3175 1.8 3tl1:B
5 1h7a:A 563 79 0.0644 0.0373 0.2658 2.7 1h78:A, 1h79:A, 1h7b:A, 1hk8:A
6 2xn2:A 729 88 0.0736 0.0329 0.2727 3.8
7 4qdf:B 357 35 0.0460 0.0420 0.4286 5.0
8 7cu3:A 1277 34 0.0276 0.0070 0.2647 5.3
9 5hzd:A 476 46 0.0460 0.0315 0.3261 6.6 5i49:A, 5ido:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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