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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TPPNAPVVTYSDIVNDLIIMQGTAEAKSQLIITDSEGNTYTLTVPDNGKWSMAIPYPSEGKFTITSVDAIGNRSDDVPLD
IMKEVPVISLSPDSDSGTVGDNITRDKQPTFIIGNLESDVVVVQVDINGTVYNAEKNADGVWFFTPGTPLADGSYTISVI
ASDAAGNQKNSLPITVTIDSTLTVPEIALAAGEDNGASDSDNVTNHTQPKFTLQHIDADVTGVTVNVTHNGVTDIYQATQ
GADGWTFTPPAAWNDGNYTLSVTVVDRAGNSQQSASLAVTVDST

The query sequence (length=284) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2yn3:C 284 283 0.9859 0.9859 0.9894 0.0 2yn3:A, 2yn3:B, 2yn3:D, 2yn5:A, 2yn5:B
2 4p99:A 415 191 0.1937 0.1325 0.2880 0.009 4kdv:A, 4kdw:A, 4p99:B, 4p99:C, 4p99:D
3 4p99:A 415 191 0.1937 0.1325 0.2880 0.009 4kdv:A, 4kdw:A, 4p99:B, 4p99:C, 4p99:D
4 4p99:A 415 82 0.0880 0.0602 0.3049 1.4 4kdv:A, 4kdw:A, 4p99:B, 4p99:C, 4p99:D
5 5k8g:A 511 54 0.0739 0.0411 0.3889 0.18 6x5v:A, 6x5w:A, 6x6m:A, 6x6q:A
6 6bt9:B 626 30 0.0528 0.0240 0.5000 0.55 6bt9:A
7 7dm0:A 167 76 0.0810 0.1377 0.3026 0.88 7dm0:B
8 7uww:A 632 51 0.0669 0.0301 0.3725 1.00 7uwu:A, 7uwu:B, 7uwv:A, 7uww:B
9 7mq8:LO 848 206 0.1655 0.0554 0.2282 1.6 7mq9:LO
10 7biz:A 478 177 0.1620 0.0962 0.2599 1.7 7biz:B
11 3nk3:A 284 88 0.0810 0.0810 0.2614 1.9 3nk3:B, 3nk4:A, 3nk4:B
12 5irb:B 314 82 0.0880 0.0796 0.3049 3.2 5irb:A
13 8cmk:A 913 28 0.0493 0.0153 0.5000 3.9 8cmk:B, 6gx9:A, 6gx9:B
14 6vjb:A 1346 67 0.0739 0.0156 0.3134 5.9
15 7edd:A 1394 67 0.0739 0.0151 0.3134 6.0 5xyr:A
16 5xxz:B 1310 67 0.0739 0.0160 0.3134 6.0
17 5xya:A 1358 67 0.0739 0.0155 0.3134 6.2 5xxz:A
18 7mqa:LO 819 80 0.0739 0.0256 0.2625 8.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218