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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TPKGTIYLTFDDGPVNASVEVIKVLNQGGVKATFYFNAWHLDGIGDENEDRALEALKLALDSGHIVGNHSYDHMIHNCVE
EFGPTSGADCNATGNHQIHSYQDPVRDAASFEQNLITLEKYLPTIRSYPNYKGYELARLPYTNGWRVTKHFQADGLCATS
DNLKPWEPGYVCDPANPSNSVKASIQVQNILANQGYQTHGWDVDWAPENWGIPMPANSLTEAVPFLAYVDKALNSCSPTT
IEPINSKTQEFPCGTPLHADKVIVLTHDFLFEDGKRGMGATQNLPKLAEFIRIAKEAGYVFDTMDNYTPRWSVGKTYQAG
EYVLYQGVVYKAVISHTAQQDWAPSSTSSLWTNADPATNWTLNVSYEQGDIVNYKGKRYLVSVPHVSQQDWTPDTQNTLF
TALELR

The query sequence (length=406) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4nyu:A 406 406 1.0000 1.0000 1.0000 0.0 4ny2:A, 4ny2:B, 4nyy:A, 4nyy:B, 4nyy:C, 4nyy:D, 4nz1:A, 4nz1:B, 4nz3:A, 4nz3:B, 4nz4:A, 4nz4:B, 4oui:A, 4oui:B
2 3wx7:A 402 401 0.8128 0.8209 0.8229 0.0 3wx7:B
3 5o6y:A 214 72 0.0640 0.1215 0.3611 4.57e-06 5o6y:B, 5o6y:C, 5o6y:D
4 2iw0:A 226 76 0.0616 0.1106 0.3289 1.37e-05
5 7ax7:A 205 95 0.0764 0.1512 0.3263 1.48e-05
6 7bly:A 216 73 0.0567 0.1065 0.3151 4.09e-05
7 2y8u:B 212 74 0.0640 0.1226 0.3514 7.47e-05 2y8u:A
8 2j13:A 207 127 0.0936 0.1836 0.2992 8.84e-05
9 2c1g:A 384 74 0.0690 0.0729 0.3784 9.94e-05 2c1i:A
10 2c71:A 205 89 0.0739 0.1463 0.3371 1.11e-04 2c79:A
11 8he1:A 225 77 0.0567 0.1022 0.2987 6.08e-04 8he2:A, 8he4:A, 8hf9:A
12 2cc0:A 192 70 0.0542 0.1146 0.3143 6.37e-04 2cc0:B
13 5n1j:A 206 71 0.0640 0.1262 0.3662 0.001 5n1j:B, 5n1j:C, 5n1j:D, 5n1p:A, 5n1p:D, 5n1p:B, 5n1p:C, 5nc6:A, 5nc6:B, 5nc6:C, 5nc6:D, 5nc9:A, 5nc9:B, 5nc9:C, 5nc9:D, 5ncd:A, 5ncd:B, 5ncd:C, 5ncd:D, 5nek:A, 5nek:B, 5nek:C, 5nek:D, 5nel:A, 5nel:B, 5nel:C, 5nel:D
14 2w3z:A 238 70 0.0567 0.0966 0.3286 0.001
15 8hfa:A 212 69 0.0542 0.1038 0.3188 0.003 8hfa:B, 8hfa:C, 8hfa:D, 8hfa:E
16 5jmu:A 220 68 0.0640 0.1182 0.3824 0.004
17 4tx8:A 374 46 0.0419 0.0455 0.3696 0.005
18 4tx8:A 374 44 0.0345 0.0374 0.3182 5.2
19 5jp6:A 339 69 0.0493 0.0590 0.2899 0.36
20 2vyo:A 206 37 0.0394 0.0777 0.4324 0.63
21 6iiy:A 237 63 0.0591 0.1013 0.3810 1.1
22 3dff:A 266 65 0.0616 0.0940 0.3846 1.4 3dfk:A, 3dfm:A, 2x9l:A, 2xad:A, 2xad:B, 2xad:C, 2xad:D
23 5izm:B 495 71 0.0468 0.0384 0.2676 1.4 5izk:A, 5izm:A
24 3idv:A 235 64 0.0517 0.0894 0.3281 1.5
25 5izk:B 451 71 0.0468 0.0421 0.2676 1.6
26 6h8l:B 206 72 0.0567 0.1117 0.3194 1.9 6h8l:A, 6h8n:A, 6h8n:B
27 7zjw:E 519 71 0.0468 0.0366 0.2676 2.2 5izl:A, 5izl:B
28 3eo7:A 487 39 0.0394 0.0329 0.4103 3.2
29 3rss:A 494 44 0.0443 0.0364 0.4091 6.4 2ax3:A, 3rrb:A, 3rre:A, 3rrf:A, 3rrj:A, 3rs8:A, 3rs9:A, 3rsf:A, 3rsg:A, 3rsq:A, 3rt7:A, 3rt9:A, 3rta:A, 3rtb:A, 3rtc:A, 3rtd:A, 3rte:A, 3rtg:A, 3ru2:A, 3ru3:A
30 3ele:A 398 77 0.0493 0.0503 0.2597 9.2 3ele:B, 3ele:C, 3ele:D
31 4wcj:A 233 72 0.0468 0.0815 0.2639 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218