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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TPHVIQQAQARELLAQIDVPQILHKLFRDLAAGLAVQPAQQLVAFPKGAGDFINYLGVLAEDGVYGVKTSPYIVGEQGPL
VTAWTLLMSMHNGQPLLLCDAHELTTARTAATTALAVDALAPLAARRLAIIGSGKVAQAHLRYVQNLRDWQHISLFSPSL
ALAQLTGLDPRLSIADSCAAAVADADVIMLCTSSAGPVLDPAHLSKPALITSISTNAPRAHEVPPHSLNAMQVFCDYRQT
TPDAAGEMLIASEQHGWDKRAVMGDLPELLSDMAQRPDYQRPVFFRSIGLGLEDIALANALYQLQR

The query sequence (length=306) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8j1g:B 312 312 1.0000 0.9808 0.9808 0.0 8j1c:A, 8j1c:B, 8j1c:D, 8j1g:A, 8j1g:C, 8j1g:D
2 6t3e:B 325 311 0.2288 0.2154 0.2251 1.10e-16 6t3e:A
3 2i99:A 312 283 0.2190 0.2147 0.2367 1.07e-13 4bv9:A, 4bv9:B, 4bva:A, 4bva:B, 2i99:B
4 6rqa:A 322 212 0.1928 0.1832 0.2783 2.34e-12 6rqa:B
5 1omo:A 320 309 0.2222 0.2125 0.2201 3.76e-10 1omo:B
6 4mp6:A 334 223 0.1667 0.1527 0.2287 5.06e-08 4mp8:A, 4mpd:A
7 4m54:A 310 223 0.1634 0.1613 0.2242 7.45e-08
8 1u7h:A 341 234 0.2124 0.1906 0.2778 8.83e-08 1u7h:B, 1x7d:A, 1x7d:B
9 7cxu:B 327 204 0.1634 0.1529 0.2451 1.81e-05
10 4tsk:A 333 74 0.0784 0.0721 0.3243 0.20
11 4xiy:A 328 78 0.0882 0.0823 0.3462 0.50 4xiy:B, 4xiy:C, 4xiy:D
12 1ksf:X 714 47 0.0556 0.0238 0.3617 0.75 1mbu:A, 1mbu:B, 1mbx:A, 1mbx:B, 1r6b:X, 1r6o:A, 1r6o:B, 1r6q:A, 1r6q:B, 7uiv:B, 7uiv:C, 7uiv:D, 7uiv:E, 7uiv:A, 7uiv:F, 7uiw:A, 7uiw:B, 7uiw:C, 7uiw:D, 7uiw:E, 7uix:B, 7uix:C, 7uix:D, 7uix:E, 7uix:F, 7uix:A, 7uiy:B, 7uiy:C, 7uiy:D, 7uiy:E, 7uiy:A, 7uiy:F, 7uiz:B, 7uiz:C, 7uiz:D, 7uiz:E, 7uiz:A, 7uiz:F, 7uj0:B, 7uj0:C, 7uj0:D, 7uj0:E, 7uj0:A, 7uj0:F, 6uqe:A, 6uqe:B, 6uqe:C, 6uqe:D, 6uqe:E, 6uqe:F, 6uqo:C, 6uqo:D, 6uqo:A, 6uqo:B, 6uqo:E, 6uqo:F, 6w1z:A, 6w1z:B, 6w1z:C, 6w1z:D, 6w1z:E, 6w1z:F, 6w20:A, 6w20:B, 6w20:C, 6w20:D, 6w20:E, 6w20:F, 6w21:A, 6w21:B, 6w21:C, 6w21:D, 6w21:E, 6w21:F, 6w22:A, 6w22:B, 6w22:C, 6w22:D, 6w22:E, 6w22:F, 6w23:A, 6w23:B, 6w23:C, 6w23:D, 6w23:E, 6w23:F, 6w24:A, 6w24:B, 6w24:C, 6w24:D, 6w24:E, 6w24:F
13 6l2i:A 324 75 0.0784 0.0741 0.3200 2.5 6l2i:B, 6l2z:A, 6l2z:B
14 6jx2:B 327 76 0.0850 0.0795 0.3421 3.8 6jx2:A, 6jx2:C, 6jx2:D
15 6ns2:A 634 103 0.0784 0.0379 0.2330 4.0 6ns2:C
16 5inj:A 355 45 0.0556 0.0479 0.3778 5.2 5k9m:A
17 8qoy:A 1036 59 0.0686 0.0203 0.3559 5.8
18 8dbr:B 513 112 0.1046 0.0624 0.2857 6.6 8dbp:A, 8dbp:B, 8dbp:C, 8dbq:A, 8dbq:B, 8dbq:C, 8dbr:A, 8dbr:C, 8dbs:A, 8dbs:B, 8dbs:C, 8dbt:A, 8dbt:B, 8dbt:C, 8dbu:A, 8dbu:B, 8dbu:C, 8dbv:A, 8dbv:B, 8dbv:C, 8dbw:A, 8dbw:B, 8dbw:C, 3oaa:A, 3oaa:B, 3oaa:C, 3oaa:I, 3oaa:J, 3oaa:K, 3oaa:Q, 3oaa:R, 3oaa:S, 3oaa:Y, 3oaa:Z, 3oaa:a, 6oqr:C, 6oqr:B, 6oqr:A, 6oqs:C, 6oqs:B, 6oqs:A, 6oqt:C, 6oqt:B, 6oqt:A, 6oqu:C, 6oqu:B, 6oqu:A, 6oqv:C, 6oqv:B, 6oqv:A, 6oqw:C, 6oqw:B, 6oqw:A, 6pqv:C, 6pqv:B, 6pqv:A, 5t4o:A, 5t4o:B, 5t4o:C, 5t4p:A, 5t4p:B, 5t4p:C, 5t4q:A, 5t4q:B, 5t4q:C, 6wnq:C, 6wnq:B, 6wnq:A, 6wnr:C, 6wnr:B, 6wnr:A
19 8abv:A 244 41 0.0458 0.0574 0.3415 7.1 8abw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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