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BioLiP
>protein
TPFERVELALDALREGRGVMVLDDNEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAYGTG
FTVTIEAAEGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCE
LTNDDGTMARAPECIAFAGQHNMAVVTIEDLVAYRQAH

The query sequence (length=198) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3lqu:A 205 202 1.0000 0.9659 0.9802 1.84e-143 1g58:A, 3lrj:A, 3lrj:B, 3lrj:C, 3lrj:D, 3ls6:A, 3ls6:B
2 4p6p:B 218 198 0.6515 0.5917 0.6515 6.27e-88 4p6c:A, 4p6c:B, 4p6d:A, 4p6d:B, 4p6p:A, 4p77:A, 4p77:B, 4p8e:A, 4p8e:B, 7uf0:A, 7uf1:A, 7uf2:A, 7uf3:A, 7uf4:A, 7uf5:A
3 1tku:A 196 197 0.4545 0.4592 0.4569 8.43e-57 2riu:A, 1tku:B
4 1k4i:A 216 209 0.4646 0.4259 0.4402 2.87e-52 1k49:A, 1k4l:A, 1k4o:A, 1k4p:A
5 4i14:A 325 205 0.4343 0.2646 0.4195 1.07e-45 4i14:B, 3mio:A, 3mio:B
6 1pvw:A 219 218 0.3182 0.2877 0.2890 1.44e-22 1pvw:B, 1pvy:A, 1pvy:B, 1snn:A, 1snn:B
7 6ofs:A 905 80 0.1061 0.0232 0.2625 1.3
8 6ajc:A 413 159 0.2172 0.1041 0.2704 2.5 6ajc:B, 6ajc:C, 6ajc:D, 6ajc:E, 6ajc:F, 6ajc:G, 6ajc:H
9 7wrr:A 650 181 0.2222 0.0677 0.2431 3.4 7wrr:B, 7wrr:C, 7wrr:D, 7wrt:A, 7wrt:B, 7wrt:C, 7wrt:D
10 8q4h:A 503 72 0.1111 0.0437 0.3056 3.4 8q4h:B
11 6aj6:A 413 153 0.2020 0.0969 0.2614 5.3 6aj6:C, 6aj8:A, 6aj8:B, 6aja:A, 6aja:B, 6aja:C, 6aja:D, 6ajb:A, 6ajb:B, 6ajb:C, 6ajb:D, 7e3n:A
12 8iqi:C 916 30 0.0505 0.0109 0.3333 5.4 8iqc:A, 8iqc:B, 8iqd:A, 8iqd:B, 8iqd:C, 8iqd:D, 8iqi:A, 8iqi:B, 8iqi:D, 8iqi:E, 8iqi:F
13 8blw:B 626 56 0.1010 0.0319 0.3571 8.2 8ptd:A, 8ptf:A
14 8zc9:B 971 29 0.0556 0.0113 0.3793 9.8 8wyb:A, 8wyb:B, 8wyb:C, 8wyb:D, 8wyc:A, 8wyc:B, 8wyf:A, 8wyf:B, 8zc9:E
15 8zc9:A 1000 29 0.0556 0.0110 0.3793 9.8 8wyc:C, 8wyc:D, 8wyf:C, 8wyf:D, 8ylt:A, 8ylt:B, 8ylt:C, 8ylt:D, 8zc9:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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