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BioLiP
>protein
TPFERVELALDALREGRGVMVLDDENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAYGT
GFTVTIEAAEGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLC
ELTNDDGTMARAPECIAFAGQHNMAVVTIEDLVAYRQAH

The query sequence (length=199) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3lqu:A 205 202 1.0000 0.9707 0.9851 2.38e-144 1g58:A, 3lrj:A, 3lrj:B, 3lrj:C, 3lrj:D, 3ls6:A, 3ls6:B
2 4p6p:B 218 198 0.6533 0.5963 0.6566 8.34e-89 4p6c:A, 4p6c:B, 4p6d:A, 4p6d:B, 4p6p:A, 4p77:A, 4p77:B, 4p8e:A, 4p8e:B, 7uf0:A, 7uf1:A, 7uf2:A, 7uf3:A, 7uf4:A, 7uf5:A
3 1tku:A 196 197 0.4573 0.4643 0.4619 1.06e-57 2riu:A, 1tku:B
4 1k4i:A 216 209 0.4673 0.4306 0.4450 3.94e-53 1k49:A, 1k4l:A, 1k4o:A, 1k4p:A
5 4i14:A 325 205 0.4372 0.2677 0.4244 1.39e-46 4i14:B, 3mio:A, 3mio:B
6 1pvw:A 219 218 0.3317 0.3014 0.3028 1.53e-23 1pvw:B, 1pvy:A, 1pvy:B, 1snn:A, 1snn:B
7 6ajc:A 413 159 0.2161 0.1041 0.2704 2.5 6ajc:B, 6ajc:C, 6ajc:D, 6ajc:E, 6ajc:F, 6ajc:G, 6ajc:H
8 7wrr:A 650 181 0.2211 0.0677 0.2431 3.5 7wrr:B, 7wrr:C, 7wrr:D, 7wrt:A, 7wrt:B, 7wrt:C, 7wrt:D
9 8q4h:A 503 72 0.1106 0.0437 0.3056 3.6 8q4h:B
10 6aj6:A 413 153 0.2010 0.0969 0.2614 5.3 6aj6:C, 6aj8:A, 6aj8:B, 6aja:A, 6aja:B, 6aja:C, 6aja:D, 6ajb:A, 6ajb:B, 6ajb:C, 6ajb:D, 7e3n:A
11 8iqi:C 916 30 0.0503 0.0109 0.3333 5.4 8iqc:A, 8iqc:B, 8iqd:A, 8iqd:B, 8iqd:C, 8iqd:D, 8iqi:A, 8iqi:B, 8iqi:D, 8iqi:E, 8iqi:F
12 6ofs:A 905 81 0.1055 0.0232 0.2593 5.9
13 8blw:B 626 56 0.1005 0.0319 0.3571 8.3 8ptd:A, 8ptf:A
14 8zc9:B 971 29 0.0553 0.0113 0.3793 9.9 8wyb:A, 8wyb:B, 8wyb:C, 8wyb:D, 8wyc:A, 8wyc:B, 8wyf:A, 8wyf:B, 8zc9:E
15 8zc9:A 1000 29 0.0553 0.0110 0.3793 9.9 8wyc:C, 8wyc:D, 8wyf:C, 8wyf:D, 8ylt:A, 8ylt:B, 8ylt:C, 8ylt:D, 8zc9:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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