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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TNTVSTMILFGSTGDLSQRMLLPALYGLDADGLLADDLVCTSRSEYDTDGFRDFAEKALDRFVASDRLNDDAKAKFLNKL
FYATVDITDPTQFGKGPVEKGIAIYLATSSSLFEGAIAGLKQAGLAGPTSRLALEKPLGQDLASSDHINDAVLKVFSEKQ
VYRIDHYLGKETVQNLLTLRFGNALFEPLWNSKGIDHVQISVAETVGLEGRIGYFDSSGSLRDMVQSHILQLVALVAMEP
PAHMEANAVRDEKVKVFRALRPINNDTVITHTVTGQYGAGVSGGKEVAGYIDELGQPSDTETFVAIKAHVDNWRWHGVPF
YIRTGKRLPARRSEIVVQFKPVPHSIFSSSGGILQPNKLRIVLQPDETIQISIMVKEPGLDRNGAHMREVWLDLSLTDVF
KDRKRRIAHERLLLDLIEGDATLFVRRDEVEAQWIWIDGIREGWKANSMKPKTYVSGTWGPITAIALVERDGVTWYDLE

The query sequence (length=479) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7xhl:G 485 485 0.9979 0.9856 0.9856 0.0 7xhl:A, 7xhl:B, 7xhl:E
2 7zve:E 500 502 0.3695 0.3540 0.3526 1.25e-86 2bh9:A, 2bhl:A, 2bhl:B, 6e07:L, 6e07:C, 6e07:F, 6e07:N, 6e07:Q, 6e07:T, 6e07:W, 6e07:B, 6e08:L, 6jyu:A, 1qki:A, 1qki:B, 1qki:C, 1qki:D, 1qki:E, 1qki:F, 1qki:G, 1qki:H, 7snh:A, 7snh:B, 7snh:C, 7snh:D, 7sni:A, 7sni:B, 7sni:C, 7sni:D, 7ual:A, 7ual:B, 7ual:C, 7ual:D, 7uc2:A, 7uc2:B, 7uc2:C, 7uc2:D, 5ukw:A, 7zvd:N
3 6d24:A 502 494 0.3570 0.3406 0.3462 2.39e-83 5aq1:A, 5aq1:B, 5aq1:C, 6d24:B, 6d24:C, 6d24:D
4 7zhu:B 543 486 0.3382 0.2983 0.3333 3.24e-83 7zhu:A, 7zhv:B, 7zhw:A, 7zhw:B, 7zhx:A, 7zhy:A, 7zhy:B, 7zhz:A, 7zhz:B
5 8u2w:A 482 489 0.3507 0.3485 0.3436 2.58e-82 8u2w:B
6 7e6i:A 484 493 0.3507 0.3471 0.3408 4.11e-79
7 1dpg:A 485 492 0.3382 0.3340 0.3293 8.29e-78 1dpg:B, 2dpg:A, 1e77:A, 1e7y:A, 1h94:A, 1h9a:A
8 7seh:B 443 499 0.3445 0.3725 0.3307 2.78e-73 7seh:A, 7sei:A, 6va0:A, 6va7:A, 6va8:A, 6va9:A, 6vaq:A
9 8cdu:C 708 79 0.0355 0.0240 0.2152 1.7 8cec:C, 8ced:C, 8cee:C
10 8cdv:C 457 79 0.0355 0.0372 0.2152 1.7
11 4udq:A 525 45 0.0334 0.0305 0.3556 2.3 6f97:A, 6f97:B, 4udp:A, 4udp:B, 4udq:B, 4udr:A, 4udr:B
12 4fee:A 586 80 0.0480 0.0392 0.2875 7.5 2ez4:A, 2ez4:B, 2ez8:A, 2ez8:B, 2ez9:A, 2ez9:B, 2ezt:A, 2ezt:B, 2ezu:A, 2ezu:B, 4fee:B, 4feg:A, 4feg:B, 6haf:A, 6haf:B, 4kgd:A, 4kgd:B, 1pow:A, 1pow:B, 1pox:A, 1pox:B, 1y9d:B
13 4elq:A 310 148 0.0835 0.1290 0.2703 7.8 4elp:A, 4elp:B, 4elp:C, 4elp:D, 4elq:B, 4elr:A, 4elr:B, 3wae:A, 3wae:B
14 1y9d:D 560 80 0.0480 0.0411 0.2875 8.2 1y9d:A, 1y9d:C
15 6zj3:SQ 122 45 0.0355 0.1393 0.3778 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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